实现实时心肌梗死诊断:利用 miRNA 标志的机器学习与离子交换膜技术的融合

IF 6.1 2区 工程技术 Q1 BIOCHEMICAL RESEARCH METHODS
Lab on a Chip Pub Date : 2024-10-04 DOI:10.1039/d4lc00640b
Xiang Ren, Ruyu Zhou, George Ronan, S. Gulberk Ozcebe, Jiaying Ji, Satyajyoti Senapati, Keith March, Eileen Handberg, David Anderson, Carl J. Pepine, Hsueh-Chia Chang, Fang Liu, Pinar Zorlutuna
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引用次数: 0

摘要

快速诊断急性心肌梗死(AMI)对于优化患者管理至关重要。急性心肌梗死的准确诊断和发病时间会影响治疗方案,如经皮冠状动脉介入治疗(PCI)。在急性心肌梗死发病 3 小时内进行 PCI 治疗最为有益。微小核糖核酸(miRNA)是一种很有前景的生物标记物,具有早期诊断急性心肌梗死的潜力,因为它们在细胞死亡和大分子物质(如心肌肌钙蛋白(cTn))释放之前就已释放,而且与 cTn 相比,无论急性心肌梗死发病时间长短,它们在血浆中都具有更高的灵敏度和稳定性。然而,由于急性心肌梗死和稳定型冠状动脉疾病(CAD)之间的 miRNA 含量重叠,基于 miRNA 的急性心肌梗死诊断可能导致假阳性。因此,我们探讨了利用 miRNA 图谱而非单一 miRNA 来区分 CAD 和 AMI 以及 AMI 发病后不同阶段的可能性。首先,我们使用 Nanostring miRNA 图谱分析技术筛选了 800 个 miRNA 文库,这些 miRNA 来自 4 个患者队列的血浆样本:无已知 CAD、CAD、ST 段抬高型心肌梗死(STEMI)和 STEMI 后行 PCI。根据机器学习 SCAD 算法和 Lasso 算法,我们筛选出了在 CAD、STEMI 和 STEMI-PCI 中差异表达的 9 个生物标志物(miR-200b、miR-543、miR-331、miR-3605、miR-301a、miR-18a、miR-423、miR-142 和 miR-132),并对它们进行了探索,以确定用于快速准确诊断 AMI 的 miRNA 图谱。正如机器学习方法中的 "鼓图 "模型所示,这 9 个 miRNA 被 SCAD 和 Lasso 选为最常识别的靶点。我们利用年龄匹配的患者样本,使用基于多重离子交换膜的 miRNA 传感器平台验证了选定的 9 种 miRNA 生物标记物,该平台作为一种床旁设备可同时测量特定的 miRNA 和作为对照的 cTn。这项研究的结果将为及时准确地诊断急性心肌梗死及其分期提供依据,这对有效管理和优化患者预后至关重要。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Towards Real-Time Myocardial Infarction Diagnosis: A Convergence of Machine Learning and Ion-Exchange Membrane Technologies Leveraging miRNA Signatures
Rapid diagnosis of acute myocardial infarction (AMI) is crucial for optimal patient management. Accurate diagnosis and time of onset of an acute event can influence treatment plans, such as percutaneous coronary intervention (PCI). PCI is most beneficial within 3 hours of AMI onset. MicroRNAs (miRNAs) are promising biomarkers, with potential of early AMI diagnosis, since they are released before cell death and subsequent release of larger molecules [e.g., cardiac troponins (cTn)], and have greater sensitivity and stability in plasma versus cTn regardless of timing of AMI onset. However, miRNA-based AMI diagnosis can result in false positives due to miRNA content overlap between AMI and stable coronary artery disease (CAD). Accordingly, we explored the possibility of using a miRNA profile, rather than a single miRNA, to distinguish between CAD and AMI, as well as different stages following AMI onset. First we screened a library of 800 miRNA using plasma samples from 4 patient cohorts; no known CAD, CAD, ST-segment elevation myocardial infarction (STEMI) and STEMI followed by PCI, using Nanostring miRNA profiling technology. From this screening, based on machine learning SCAD and Lasso algorithms, we identified 9 biomarkers (miR-200b, miR-543, miR-331, miR-3605, miR-301a, miR-18a, miR-423, miR-142, and miR-132) that were differentially expressed in CAD, STEMI and STEMI-PCI and explored them to identify a miRNA profile for rapid and accurate AMI diagnosis. These 9 miRNAs were selected as the most frequently identified targets by SCAD and Lasso, as indicated in the “drum-plot” model in machine learning approach. We used age-matched patient samples to validate selected 9 miRNA biomarkers using a multiplexed ion-exchange membrane-based miRNA sensor platform, which measures specific miRNAs, and cTn as a control, simultaneously as a point-of-care device. Findings from this study will inform timely and accurate diagnosis of AMI and its stages, which are essential for effective management and optimal patient outcomes.
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来源期刊
Lab on a Chip
Lab on a Chip 工程技术-化学综合
CiteScore
11.10
自引率
8.20%
发文量
434
审稿时长
2.6 months
期刊介绍: Lab on a Chip is the premiere journal that publishes cutting-edge research in the field of miniaturization. By their very nature, microfluidic/nanofluidic/miniaturized systems are at the intersection of disciplines, spanning fundamental research to high-end application, which is reflected by the broad readership of the journal. Lab on a Chip publishes two types of papers on original research: full-length research papers and communications. Papers should demonstrate innovations, which can come from technical advancements or applications addressing pressing needs in globally important areas. The journal also publishes Comments, Reviews, and Perspectives.
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