Valentina Carrasco, Matías Vargas-Reyes, Sebastián Lagos-Moraga, Claudio Dietz-Vargas, Daniela Allendes-Ormazábal, Juan Meza-Inzunza, Fernanda Rojas-Morales, Sebastián Durán-Villegas, Felipe Valenzuela-Ibaceta, Ma Ángeles Cabrera, José M Pérez-Donoso
{"title":"从南极洲联合冰川的土壤样本中分离出两个具有生物合成荧光纳米粒子能力的新物种--Rhodococcus navarretei sp.","authors":"Valentina Carrasco, Matías Vargas-Reyes, Sebastián Lagos-Moraga, Claudio Dietz-Vargas, Daniela Allendes-Ormazábal, Juan Meza-Inzunza, Fernanda Rojas-Morales, Sebastián Durán-Villegas, Felipe Valenzuela-Ibaceta, Ma Ángeles Cabrera, José M Pérez-Donoso","doi":"10.1099/ijsem.0.006536","DOIUrl":null,"url":null,"abstract":"<p><p>Two Gram-stain-positive bacterial strains, EXRC-4A-4<sup>T</sup> and RC-2-3<sup>T</sup>, were isolated from soil samples collected at Union Glacier, Antarctica. Based on 16S rRNA gene sequence similarity, strain EXRC-4A-4<sup>T</sup> was identified as belonging to the genus <i>Rhodococcus</i>, and strain RC-2-3<sup>T</sup> to the genus <i>Pseudarthrobacter</i>. Further genomic analyses, including average nucleotide identity and digital DNA-DNA hybridization, suggested that these strains represent new species. Strain EXRC-4A-4<sup>T</sup> exhibited growth at temperatures ranging from 4 to 28 °C (optimum between 20 and 28 °C), at pH 5.0-9.0 (optimum, pH 6.0), and in the presence of 0-5.0% NaCl (optimum between 0 and 1% NaCl). Strain RC-2-3<sup>T</sup> grew at 4-28 °C (optimum growth at 28 °C), pH 6.0-10 (optimum, pH 7.0) and in the presence of 0-5.0% NaCl (optimum, 1% NaCl). The fatty acid profile of EXRC-4A-4<sup>T</sup> was dominated by C<sub>17:1 ω-7</sub>, while that of RC-2-3<sup>T</sup> was dominated by anteiso-C<sub>15 : 0</sub>. The draft genome sequences revealed a DNA G+C content of 64.6 mol% for EXRC-4A-4<sup>T</sup> and 65.8 mol% for RC-2-3<sup>T</sup>. Based on this polyphasic study, EXRC-4A-4<sup>T</sup> and RC-2-3<sup>T</sup> represent two novel species within the genera <i>Rhodococcus</i> and <i>Pseudarthrobacter</i>, respectively. We propose the names <i>Rhodococcus navarretei</i> sp. nov. and <i>Pseudarthrobacter quantipunctorum</i> sp. nov. The type strains are <i>Rhodococcus navarretei</i> EXRC-4A-4<sup>T</sup> and <i>Pseudarthrobacter quantipunctorum</i> RC-2-3<sup>T</sup>. These strains have been deposited deposited in the CChRGM and BCCM/LMG culture collections with entry numbers RGM 3539/LMG 33621 and RGM 3538/LMG 33620, respectively.</p>","PeriodicalId":2,"journal":{"name":"ACS Applied Bio Materials","volume":null,"pages":null},"PeriodicalIF":4.6000,"publicationDate":"2024-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11449289/pdf/","citationCount":"0","resultStr":"{\"title\":\"<i>Rhodococcus navarretei</i> sp. nov. and <i>Pseudarthrobacter quantipunctorum</i> sp. nov., two novel species with the ability to biosynthesize fluorescent nanoparticles, isolated from soil samples at Union Glacier, Antarctica.\",\"authors\":\"Valentina Carrasco, Matías Vargas-Reyes, Sebastián Lagos-Moraga, Claudio Dietz-Vargas, Daniela Allendes-Ormazábal, Juan Meza-Inzunza, Fernanda Rojas-Morales, Sebastián Durán-Villegas, Felipe Valenzuela-Ibaceta, Ma Ángeles Cabrera, José M Pérez-Donoso\",\"doi\":\"10.1099/ijsem.0.006536\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Two Gram-stain-positive bacterial strains, EXRC-4A-4<sup>T</sup> and RC-2-3<sup>T</sup>, were isolated from soil samples collected at Union Glacier, Antarctica. Based on 16S rRNA gene sequence similarity, strain EXRC-4A-4<sup>T</sup> was identified as belonging to the genus <i>Rhodococcus</i>, and strain RC-2-3<sup>T</sup> to the genus <i>Pseudarthrobacter</i>. Further genomic analyses, including average nucleotide identity and digital DNA-DNA hybridization, suggested that these strains represent new species. Strain EXRC-4A-4<sup>T</sup> exhibited growth at temperatures ranging from 4 to 28 °C (optimum between 20 and 28 °C), at pH 5.0-9.0 (optimum, pH 6.0), and in the presence of 0-5.0% NaCl (optimum between 0 and 1% NaCl). Strain RC-2-3<sup>T</sup> grew at 4-28 °C (optimum growth at 28 °C), pH 6.0-10 (optimum, pH 7.0) and in the presence of 0-5.0% NaCl (optimum, 1% NaCl). The fatty acid profile of EXRC-4A-4<sup>T</sup> was dominated by C<sub>17:1 ω-7</sub>, while that of RC-2-3<sup>T</sup> was dominated by anteiso-C<sub>15 : 0</sub>. The draft genome sequences revealed a DNA G+C content of 64.6 mol% for EXRC-4A-4<sup>T</sup> and 65.8 mol% for RC-2-3<sup>T</sup>. Based on this polyphasic study, EXRC-4A-4<sup>T</sup> and RC-2-3<sup>T</sup> represent two novel species within the genera <i>Rhodococcus</i> and <i>Pseudarthrobacter</i>, respectively. We propose the names <i>Rhodococcus navarretei</i> sp. nov. and <i>Pseudarthrobacter quantipunctorum</i> sp. nov. The type strains are <i>Rhodococcus navarretei</i> EXRC-4A-4<sup>T</sup> and <i>Pseudarthrobacter quantipunctorum</i> RC-2-3<sup>T</sup>. These strains have been deposited deposited in the CChRGM and BCCM/LMG culture collections with entry numbers RGM 3539/LMG 33621 and RGM 3538/LMG 33620, respectively.</p>\",\"PeriodicalId\":2,\"journal\":{\"name\":\"ACS Applied Bio Materials\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":4.6000,\"publicationDate\":\"2024-10-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11449289/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"ACS Applied Bio Materials\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1099/ijsem.0.006536\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"MATERIALS SCIENCE, BIOMATERIALS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"ACS Applied Bio Materials","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1099/ijsem.0.006536","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"MATERIALS SCIENCE, BIOMATERIALS","Score":null,"Total":0}
Rhodococcus navarretei sp. nov. and Pseudarthrobacter quantipunctorum sp. nov., two novel species with the ability to biosynthesize fluorescent nanoparticles, isolated from soil samples at Union Glacier, Antarctica.
Two Gram-stain-positive bacterial strains, EXRC-4A-4T and RC-2-3T, were isolated from soil samples collected at Union Glacier, Antarctica. Based on 16S rRNA gene sequence similarity, strain EXRC-4A-4T was identified as belonging to the genus Rhodococcus, and strain RC-2-3T to the genus Pseudarthrobacter. Further genomic analyses, including average nucleotide identity and digital DNA-DNA hybridization, suggested that these strains represent new species. Strain EXRC-4A-4T exhibited growth at temperatures ranging from 4 to 28 °C (optimum between 20 and 28 °C), at pH 5.0-9.0 (optimum, pH 6.0), and in the presence of 0-5.0% NaCl (optimum between 0 and 1% NaCl). Strain RC-2-3T grew at 4-28 °C (optimum growth at 28 °C), pH 6.0-10 (optimum, pH 7.0) and in the presence of 0-5.0% NaCl (optimum, 1% NaCl). The fatty acid profile of EXRC-4A-4T was dominated by C17:1 ω-7, while that of RC-2-3T was dominated by anteiso-C15 : 0. The draft genome sequences revealed a DNA G+C content of 64.6 mol% for EXRC-4A-4T and 65.8 mol% for RC-2-3T. Based on this polyphasic study, EXRC-4A-4T and RC-2-3T represent two novel species within the genera Rhodococcus and Pseudarthrobacter, respectively. We propose the names Rhodococcus navarretei sp. nov. and Pseudarthrobacter quantipunctorum sp. nov. The type strains are Rhodococcus navarretei EXRC-4A-4T and Pseudarthrobacter quantipunctorum RC-2-3T. These strains have been deposited deposited in the CChRGM and BCCM/LMG culture collections with entry numbers RGM 3539/LMG 33621 and RGM 3538/LMG 33620, respectively.