巴西胃癌队列的聚类分类显示出 p53 正常率在人群中的显著差异。

IF 1.1 Q2 MEDICINE, GENERAL & INTERNAL
Einstein-Sao Paulo Pub Date : 2024-09-30 eCollection Date: 2024-01-01 DOI:10.31744/einstein_journal/2024AO0508
Fábio Ribeiro Queiroz, Letícia da Conceição Braga, Carolina Pereira de Souza Melo, Matheus de Souza Gomes, Laurence Rodrigues do Amaral, Paulo Guilherme de Oliveira Salles
{"title":"巴西胃癌队列的聚类分类显示出 p53 正常率在人群中的显著差异。","authors":"Fábio Ribeiro Queiroz, Letícia da Conceição Braga, Carolina Pereira de Souza Melo, Matheus de Souza Gomes, Laurence Rodrigues do Amaral, Paulo Guilherme de Oliveira Salles","doi":"10.31744/einstein_journal/2024AO0508","DOIUrl":null,"url":null,"abstract":"<p><strong>Background: </strong>Queiroz et al. showed that the application of cluster methodology for classifying gastric cancer is suitable and efficient within a Brazilian cohort, which is known for its population heterogeneity. The study highlighted the potential utilization of this method within public health services due to its low-cost, presenting a viable means to improve the diagnosis and prognosis of gastric cancer.</p><p><strong>Background: </strong>Our Brazilian cohort with gastric cancer has a distinct distribution between mutated and normal p53.</p><p><strong>Background: </strong>New genetic marker-based classifications improve gastric cancer diagnosis accuracy.</p><p><strong>Background: </strong>Machine learning integration enhances predictive value in gastric cancer diagnosis.</p><p><strong>Background: </strong>Molecular biomarkers complement clinical decisions, advancing personalized medicine.</p><p><strong>Objective: </strong>Gastric adenocarcinoma remains an aggressive disease with a poor prognosis, as evidenced by a 5-year survival rate of approximately 31%. The histological classifications already proposed do not accurately reflect the high biological heterogeneity of this neoplasm, particularly in diverse populations, and new classification systems using genetic markers have recently been proposed. Following these newly proposed models, we aimed to assess the cluster distribution in a Brazilian cohort. Furthermore, we evaluated whether the inclusion of other clinical and histological parameters could enhance the predictive value.</p><p><strong>Methods: </strong>We used a previously described four-immunohistochemistry/EBER-ISH marker to classify a cohort of 30 Brazilian patients with gastric adenocarcinoma into five different clusters and compared the distribution with other genetically diverse populations. Furthermore, we used artificial intelligence methods to evaluate whether other clinical and pathological parameters could improve the results of the methodology.</p><p><strong>Results: </strong>Disclosing the genetic variability between populations, we observed a more balanced distribution of the aberrant/normal p53 ratio (0.6) between patients negative for the other markers tested, unlike previous studies with Asian and North American populations. In addition, decision tree analysis reinforced the efficiency of these new classifications, as the stratification accuracy was not altered with or without additional data.</p><p><strong>Conclusion: </strong>Our study underscores the importance of local research in characterizing diverse populations and highlights the complementary role of molecular biomarkers in personalized medicine for gastric adenocarcinoma, enhancing diagnostic accuracy and potentially improving survival rates.</p>","PeriodicalId":47359,"journal":{"name":"Einstein-Sao Paulo","volume":"22 ","pages":"eAO0508"},"PeriodicalIF":1.1000,"publicationDate":"2024-09-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11461015/pdf/","citationCount":"0","resultStr":"{\"title\":\"Cluster classification of a Brazilian gastric cancer cohort reveals remarkable populational differences in normal p53 rate.\",\"authors\":\"Fábio Ribeiro Queiroz, Letícia da Conceição Braga, Carolina Pereira de Souza Melo, Matheus de Souza Gomes, Laurence Rodrigues do Amaral, Paulo Guilherme de Oliveira Salles\",\"doi\":\"10.31744/einstein_journal/2024AO0508\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Background: </strong>Queiroz et al. showed that the application of cluster methodology for classifying gastric cancer is suitable and efficient within a Brazilian cohort, which is known for its population heterogeneity. The study highlighted the potential utilization of this method within public health services due to its low-cost, presenting a viable means to improve the diagnosis and prognosis of gastric cancer.</p><p><strong>Background: </strong>Our Brazilian cohort with gastric cancer has a distinct distribution between mutated and normal p53.</p><p><strong>Background: </strong>New genetic marker-based classifications improve gastric cancer diagnosis accuracy.</p><p><strong>Background: </strong>Machine learning integration enhances predictive value in gastric cancer diagnosis.</p><p><strong>Background: </strong>Molecular biomarkers complement clinical decisions, advancing personalized medicine.</p><p><strong>Objective: </strong>Gastric adenocarcinoma remains an aggressive disease with a poor prognosis, as evidenced by a 5-year survival rate of approximately 31%. The histological classifications already proposed do not accurately reflect the high biological heterogeneity of this neoplasm, particularly in diverse populations, and new classification systems using genetic markers have recently been proposed. Following these newly proposed models, we aimed to assess the cluster distribution in a Brazilian cohort. Furthermore, we evaluated whether the inclusion of other clinical and histological parameters could enhance the predictive value.</p><p><strong>Methods: </strong>We used a previously described four-immunohistochemistry/EBER-ISH marker to classify a cohort of 30 Brazilian patients with gastric adenocarcinoma into five different clusters and compared the distribution with other genetically diverse populations. Furthermore, we used artificial intelligence methods to evaluate whether other clinical and pathological parameters could improve the results of the methodology.</p><p><strong>Results: </strong>Disclosing the genetic variability between populations, we observed a more balanced distribution of the aberrant/normal p53 ratio (0.6) between patients negative for the other markers tested, unlike previous studies with Asian and North American populations. In addition, decision tree analysis reinforced the efficiency of these new classifications, as the stratification accuracy was not altered with or without additional data.</p><p><strong>Conclusion: </strong>Our study underscores the importance of local research in characterizing diverse populations and highlights the complementary role of molecular biomarkers in personalized medicine for gastric adenocarcinoma, enhancing diagnostic accuracy and potentially improving survival rates.</p>\",\"PeriodicalId\":47359,\"journal\":{\"name\":\"Einstein-Sao Paulo\",\"volume\":\"22 \",\"pages\":\"eAO0508\"},\"PeriodicalIF\":1.1000,\"publicationDate\":\"2024-09-30\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11461015/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Einstein-Sao Paulo\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.31744/einstein_journal/2024AO0508\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2024/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q2\",\"JCRName\":\"MEDICINE, GENERAL & INTERNAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Einstein-Sao Paulo","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.31744/einstein_journal/2024AO0508","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/1/1 0:00:00","PubModel":"eCollection","JCR":"Q2","JCRName":"MEDICINE, GENERAL & INTERNAL","Score":null,"Total":0}
引用次数: 0

摘要

背景Queiroz等人的研究表明,在以人口异质性著称的巴西队列中,应用聚类方法对胃癌进行分类是合适而有效的。该研究强调,由于该方法成本低廉,可在公共卫生服务中使用,是改善胃癌诊断和预后的可行方法:我们的巴西胃癌患者队列中,p53突变和正常的胃癌患者有明显的分布:基于遗传标记的新分类提高了胃癌诊断的准确性:背景:机器学习整合提高了胃癌诊断的预测价值:分子生物标志物补充了临床决策,推动了个性化医疗的发展:胃腺癌是一种侵袭性疾病,预后较差,5 年生存率约为 31%。已经提出的组织学分类并不能准确反映这种肿瘤的高度生物异质性,尤其是在不同人群中,因此最近提出了使用遗传标记物的新分类系统。根据这些新提出的模型,我们旨在评估巴西队列中的群组分布。此外,我们还评估了纳入其他临床和组织学参数是否能提高预测价值:我们使用之前描述的四种免疫组化/EBER-ISH 标记将 30 名巴西胃腺癌患者分为五个不同的群组,并将其分布与其他不同基因的人群进行比较。此外,我们还利用人工智能方法评估了其他临床和病理参数是否能改善该方法的结果:结果:与以往针对亚洲和北美人群的研究不同,我们观察到在其他标记物检测结果为阴性的患者中,畸变/正常 p53 比率(0.6)的分布更为均衡,这揭示了不同人群之间的遗传变异性。此外,决策树分析加强了这些新分类的效率,因为无论是否有额外的数据,分层的准确性都不会改变:我们的研究强调了本地研究在描述不同人群特征方面的重要性,突出了分子生物标记物在胃腺癌个性化医疗中的补充作用,提高了诊断的准确性,并有可能提高生存率。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Cluster classification of a Brazilian gastric cancer cohort reveals remarkable populational differences in normal p53 rate.

Background: Queiroz et al. showed that the application of cluster methodology for classifying gastric cancer is suitable and efficient within a Brazilian cohort, which is known for its population heterogeneity. The study highlighted the potential utilization of this method within public health services due to its low-cost, presenting a viable means to improve the diagnosis and prognosis of gastric cancer.

Background: Our Brazilian cohort with gastric cancer has a distinct distribution between mutated and normal p53.

Background: New genetic marker-based classifications improve gastric cancer diagnosis accuracy.

Background: Machine learning integration enhances predictive value in gastric cancer diagnosis.

Background: Molecular biomarkers complement clinical decisions, advancing personalized medicine.

Objective: Gastric adenocarcinoma remains an aggressive disease with a poor prognosis, as evidenced by a 5-year survival rate of approximately 31%. The histological classifications already proposed do not accurately reflect the high biological heterogeneity of this neoplasm, particularly in diverse populations, and new classification systems using genetic markers have recently been proposed. Following these newly proposed models, we aimed to assess the cluster distribution in a Brazilian cohort. Furthermore, we evaluated whether the inclusion of other clinical and histological parameters could enhance the predictive value.

Methods: We used a previously described four-immunohistochemistry/EBER-ISH marker to classify a cohort of 30 Brazilian patients with gastric adenocarcinoma into five different clusters and compared the distribution with other genetically diverse populations. Furthermore, we used artificial intelligence methods to evaluate whether other clinical and pathological parameters could improve the results of the methodology.

Results: Disclosing the genetic variability between populations, we observed a more balanced distribution of the aberrant/normal p53 ratio (0.6) between patients negative for the other markers tested, unlike previous studies with Asian and North American populations. In addition, decision tree analysis reinforced the efficiency of these new classifications, as the stratification accuracy was not altered with or without additional data.

Conclusion: Our study underscores the importance of local research in characterizing diverse populations and highlights the complementary role of molecular biomarkers in personalized medicine for gastric adenocarcinoma, enhancing diagnostic accuracy and potentially improving survival rates.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Einstein-Sao Paulo
Einstein-Sao Paulo MEDICINE, GENERAL & INTERNAL-
CiteScore
2.00
自引率
0.00%
发文量
210
审稿时长
38 weeks
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信