利用图像处理和机器学习自动分析小鼠的新型物体识别测试。

IF 2.6 3区 心理学 Q2 BEHAVIORAL SCIENCES
Takuya Kishi , Koji Kobayashi , Kazuo Sasagawa , Katsuya Sakimura , Takashi Minato , Misato Kida , Takahiro Hata , Yoshihiro Kitagawa , Chihiro Okuma , Takahisa Murata
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引用次数: 0

摘要

新奇物体识别测试(NORT)是实验动物最常用的行为测试之一,旨在评估动物对新奇事物的兴趣和识别能力。然而,依赖研究人员观察的手动程序阻碍了高通量分析。在本研究中,我们开发了一种利用机器学习辅助探索行为检测的 NORT 自动分析方法。我们使用摄像机记录了小鼠的探索行为。使用预先训练好的机器学习模型 DeepLabCut 检测录制视频文件中小鼠鼻子和尾巴根部的坐标。然后将每段视频分割成帧图像,并根据人工观察将帧图像分为 "探索 "帧和 "非探索 "帧。鼠标特征向量被计算为从鼻子到物体顶点的向量,并用于 SVM 训练。经过训练的 SVM 能有效检测出探索行为,并与人类观察者的评估结果显示出很强的相关性。将 SVM 应用于 NORT 后,SVM 预测的小鼠对物体的探索行为持续时间与人类观察者的评估结果呈现出显著的相关性。SVM 预测得出的新奇辨别指数也与人类观察得出的指数非常吻合。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Automated analysis of a novel object recognition test in mice using image processing and machine learning
The novel object recognition test (NORT) is one of the most commonly employed behavioral tests in experimental animals designed to evaluate an animal's interest in and recognition of novelty. However, manual procedures, which rely on researchers’ observations, prevent high throughput analysis. In this study, we developed an automated analysis method for NORT utilizing machine learning-assisted exploratory behavior detection. We recorded the exploratory behavior of the mice using a video camera. The coordinates of the mouse nose and tail base in recorded video files were detected using a pre-trained machine learning model, DeepLabCut. Each video was then segmented into frame images, which were categorized into "exploratory,” or "non-exploratory" frames based on manual observation. Mouse feature vectors were calculated as vectors from the nose to the vertices of the object and were utilized for SVM training. The trained SVM effectively detected exploratory behaviors, showing a strong correlation with human observer assessments. Upon application to NORT, the duration of mouse exploratory behavior towards objects predicted by the SVM exhibited a significant correlation with the assessments made by human observers. The novelty discrimination index derived from the SVM predictions also aligned well with that from human observations.
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来源期刊
Behavioural Brain Research
Behavioural Brain Research 医学-行为科学
CiteScore
5.60
自引率
0.00%
发文量
383
审稿时长
61 days
期刊介绍: Behavioural Brain Research is an international, interdisciplinary journal dedicated to the publication of articles in the field of behavioural neuroscience, broadly defined. Contributions from the entire range of disciplines that comprise the neurosciences, behavioural sciences or cognitive sciences are appropriate, as long as the goal is to delineate the neural mechanisms underlying behaviour. Thus, studies may range from neurophysiological, neuroanatomical, neurochemical or neuropharmacological analysis of brain-behaviour relations, including the use of molecular genetic or behavioural genetic approaches, to studies that involve the use of brain imaging techniques, to neuroethological studies. Reports of original research, of major methodological advances, or of novel conceptual approaches are all encouraged. The journal will also consider critical reviews on selected topics.
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