非统计反应性效应建模策略:将化学活化估计值与振动弛豫模型相结合

IF 5.5 1区 化学 Q2 CHEMISTRY, PHYSICAL
Tomislav Rožić, Matthew S. Teynor, Nađa Došlić, David M. Leitner, Gemma C. Solomon
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引用次数: 0

摘要

许多化学反应的动力学可以很容易地用统计方法来解释,例如,使用某种形式的过渡态理论并沿反应坐标比较计算出的吉布斯能。然而,这种方法也有失效的时候,特别是当分子振动弛豫到统计平衡的时间尺度与反应动力学的时间尺度相同时,无论这种弛豫是由慢速弛豫、快速反应还是两者共同引起的。这些非统计现象通常使用(准)经典 ab initio 分子动力学进行计算探索,在计算大量轨迹的同时容易出现零点能量泄漏等问题。在这一领域的另一面,我们看到了资源密集型量子动力学模拟,它极大地限制了可探索系统的规模。我们发现,利用基于非谐波耦合常数的费米黄金法则振动弛豫模型,我们可以提取相同的定性信息,同时还能深入了解如何增强(或消除)造成这些现象的瓶颈。我们将这一模型作为探索复杂非统计行为的中间地带,能够处理中等大小的有机分子或生物相关片段。我们还介绍了所面临的挑战,特别是如何量化振动模式的过剩能量。依靠现成的电子结构方法,并以简单的主方程形式提供结果,该模型有望成为无需外部控制的模式选择性化学机会筛选工具。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

A Strategy for Modeling Nonstatistical Reactivity Effects: Combining Chemical Activation Estimates with a Vibrational Relaxation Model

A Strategy for Modeling Nonstatistical Reactivity Effects: Combining Chemical Activation Estimates with a Vibrational Relaxation Model
The kinetics of many chemical reactions can be readily explained with a statistical approach, for example, using a form of transition state theory and comparing calculated Gibbs energies along the reaction coordinate(s). However, there are cases where this approach fails, notably when the vibrational relaxation of the molecule to its statistical equilibrium occurs on the same time scale as the reaction dynamics, whether it is caused by slow relaxation, a fast reaction, or both. These nonstatistical phenomena are then often explored computationally using (quasi)classical ab initio molecular dynamics by calculating a large number of trajectories while being prone to issues such as zero-point energy leakage. On the other side of the field, we see resource-intensive quantum dynamics simulations, which significantly limit the size of explorable systems. We find that using a Fermi’s golden rule type of model for vibrational relaxation, based on anharmonic coupling constants, we can extract the same qualitative information while giving insights into how to enhance (or destroy) the bottlenecks causing the phenomena. We present this model as a middle ground for exploring complex nonstatistical behavior, capable of treating medium-sized organic molecules or biologically relevant fragments. We also cover the challenges involved, in particular quantifying the excess energy in terms of vibrational modes. Relying on readily available electronic structure methods and providing results in a simple master equation form, this model shows promise as a screening tool for opportunities in mode-selective chemistry without external control.
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来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
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