通过生物信息学探索非酒精性脂肪性肝炎和肝细胞癌的共同遗传特征和分子机制。

IF 1.6 4区 医学 Q4 BIOCHEMICAL RESEARCH METHODS
ChengLong Tian, Zheng Li, QinLong Liu
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引用次数: 0

摘要

背景:肝细胞癌(HCC)是世界上最常见的恶性肿瘤之一:肝细胞癌(HCC)是世界上最常见的恶性肿瘤之一,具有高发病率、高恶性度和低存活率的特点。目前,全球有1/4的成年人患有非酒精性脂肪肝(NAFLD),亚洲的发病率高达27%:我们利用TCGA和GEO公共数据库数据集进行加权基因共表达网络分析,找出相关基因模块,将肿瘤发生相关模块和NASH发展相关模块的交叉点定义为共享基因,然后利用单因素Cox、LASSO和多变量Cox回归分析筛选出核心共享基因,并验证其预后价值。我们进一步研究了核心共享基因与免疫浸润、肿瘤突变负荷和药物敏感性之间的关系。最后,我们使用 RT-qPCR 验证了其在不同细胞系中的 mRNA 表达:结果:我们发现 Karyopherin α 2 (KPNA2) 是 NASH 和 HCC 的核心共享基因。根据KPNA2的表达将患者分为低危组和高危组。低危组的预后明显优于高危组。此外,我们还发现不同表达组在肿瘤免疫细胞浸润、体细胞突变、微卫星不稳定性和药物敏感性方面存在明显差异:结论:关于非酒精性脂肪肝与 HCC 关系的分子机制的研究很少。我们的研究表明,KPNA2 是非酒精性脂肪肝和 HCC 患者的潜在治疗靶点和免疫相关生物标志物。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Exploring Shared Genetic Features and Molecular Mechanisms between Non-Alcoholic Steatohepatitis and Hepatocellular Carcinoma through Bioinformatics.

Background: Hepatocellular Carcinoma (HCC) is one of the most common malignant tumors in the world, characterized by high incidence, high malignancy, and low survival rate. Currently, 1/4 of adults in the world suffer from Non-Alcoholic Fatty Liver Disease (NAFLD), with an incidence rate of 27% in Asia.

Methods: We used TCGA and GEO public database data sets to conduct weighted gene coexpression network analysis to identify relevant gene modules, defined the intersection of tumorigenesis-related modules and NASH development-related modules as shared genes, and then used single-factor Cox, LASSO, and multivariate Cox regression analysis screened out core shared genes and verified their prognostic value. We further investigated the relationship between core shared genes and immune infiltration, tumor mutational load, and drug sensitivity. Finally, RT-qPCR was used to verify its mRNA expression in different cell lines.

Results: We identified Karyopherin α 2 (KPNA2) as the core shared gene between NASH and HCC. Patients were divided into low-risk groups and high-risk groups based on the expression of KPNA2. The prognosis of the low-risk group was significantly better than that of the highrisk group. Furthermore, we found significant differences in tumor immune cell infiltration, somatic mutations, microsatellite instability, and drug sensitivity between different expression groups.

Conclusion: There are very few studies on the molecular mechanism of the relationship between NAFLD and HCC. Our study demonstrates that KPNA2 is a potential therapeutic target and immune-related biomarker for patients with NAFLD and HCC.

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来源期刊
CiteScore
3.10
自引率
5.60%
发文量
327
审稿时长
7.5 months
期刊介绍: Combinatorial Chemistry & High Throughput Screening (CCHTS) publishes full length original research articles and reviews/mini-reviews dealing with various topics related to chemical biology (High Throughput Screening, Combinatorial Chemistry, Chemoinformatics, Laboratory Automation and Compound management) in advancing drug discovery research. Original research articles and reviews in the following areas are of special interest to the readers of this journal: Target identification and validation Assay design, development, miniaturization and comparison High throughput/high content/in silico screening and associated technologies Label-free detection technologies and applications Stem cell technologies Biomarkers ADMET/PK/PD methodologies and screening Probe discovery and development, hit to lead optimization Combinatorial chemistry (e.g. small molecules, peptide, nucleic acid or phage display libraries) Chemical library design and chemical diversity Chemo/bio-informatics, data mining Compound management Pharmacognosy Natural Products Research (Chemistry, Biology and Pharmacology of Natural Products) Natural Product Analytical Studies Bipharmaceutical studies of Natural products Drug repurposing Data management and statistical analysis Laboratory automation, robotics, microfluidics, signal detection technologies Current & Future Institutional Research Profile Technology transfer, legal and licensing issues Patents.
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