元基因组学对深海大型硫化物矿床浅层区 Zetaproteobacteria 和 Gammaproteobacteria 生态生理学的启示。

IF 2.1 4区 环境科学与生态学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
Nao Masuda, Shingo Kato, Moriya Ohkuma, Kazuyoshi Endo
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引用次数: 0

摘要

深海块状硫化物矿床是黑暗、寒冷环境中化合生态系统的能量来源,即使在热液活动停止之后也是如此。然而,硫化物矿床内微生物群落沿其距离海底深度的垂直分布及其生态作用仍不清楚。在此,我们对在西太平洋南马里亚纳海槽热液不活跃海域钻取的块状硫化物沉积岩芯样本(样本深度:海底以下 0.52 ‍ ‍m)进行了独立于培养的元基因组分析。根据所获得的元基因组组装基因组(MAGs)的基因背景,我们展示了尚未培养的微生物的代谢潜力,尤其是富含氢氧化铁的浅海区域所特有的微生物。作为初级生产者,加玛蛋白细菌(Gammaproteobacteria)的一些成员具有将还原硫(如硫化物和硫代硫酸盐)氧化为硫酸盐、将硝酸盐还原为氨以及通过卡尔文-本森-巴塞尔循环(CBB)进行碳固定的潜力。Zetaproteobacteria成员具有铁氧化和微需氧呼吸的潜力。与之前报道的来自块状硫化物矿床深层区域(海底以下约 2 ‍ ‍m 处)的元基因组进行比较分析后发现,浅层和深层区域的每种推定初级生产者的相对丰度都有所不同。我们的研究结果拓展了对深海块状硫化物矿床中未培养微生物生态潜力的认识,并为化合生态系统的垂直分布模式提供了见解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Metagenomic Insights into Ecophysiology of Zetaproteobacteria and Gammaproteobacteria in Shallow Zones within Deep-sea Massive Sulfide Deposits.

Deep-sea massive sulfide deposits serve as energy sources for chemosynthetic ecosystems in dark, cold environments even after hydrothermal activity ceases. However, the vertical distribution of microbial communities within sulfide deposits along their depth from the seafloor as well as their ecological roles remain unclear. We herein conducted a culture-independent metagenomic ana-lysis of a core sample of massive sulfide deposits collected in a hydrothermally inactive field of the Southern Mariana Trough, Western Pacific, by drilling (sample depth: 0.52‍ ‍m below the seafloor). Based on the gene context of the metagenome-assembled genomes (MAGs) obtained, we showed the metabolic potential of as-yet-uncultivated microorganisms, particularly those unique to the shallow zone rich in iron hydroxides. Some members of Gammaproteobacteria have potential for the oxidation of reduced sulfur species (such as sulfide and thiosulfate) to sulfate coupled to nitrate reduction to ammonia and carbon fixation via the Calvin-Benson-Bassham (CBB) cycle, as the primary producers. The Zetaproteobacteria member has potential for iron oxidation coupled with microaerobic respiration. A comparative ana-lysis with previously reported metagenomes from deeper zones (~2‍ ‍m below the seafloor) of massive sulfide deposits revealed a difference in the relative abundance of each putative primary producer between the shallow and deep zones. Our results expand knowledge on the ecological potential of uncultivated microorganisms in deep-sea massive sulfide deposits and provide insights into the vertical distribution patterns of chemosynthetic ecosystems.

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来源期刊
Microbes and Environments
Microbes and Environments 生物-生物工程与应用微生物
CiteScore
4.10
自引率
13.60%
发文量
66
审稿时长
3 months
期刊介绍: Microbial ecology in natural and engineered environments; Microbial degradation of xenobiotic compounds; Microbial processes in biogeochemical cycles; Microbial interactions and signaling with animals and plants; Interactions among microorganisms; Microorganisms related to public health; Phylogenetic and functional diversity of microbial communities; Genomics, metagenomics, and bioinformatics for microbiology; Application of microorganisms to agriculture, fishery, and industry; Molecular biology and biochemistry related to environmental microbiology; Methodology in general and environmental microbiology; Interdisciplinary research areas for microbial ecology (e.g., Astrobiology, and Origins of Life); Taxonomic description of novel microorganisms with ecological perspective; Physiology and metabolisms of microorganisms; Evolution of genes and microorganisms; Genome report of microorganisms with ecological perspective.
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