Jiyeon Lee, Eewon Tai, Sunyoung Jeong, Ile Kim, Bo-Eun Kim, Myeong-In Jeong, Kwang-Kyo Oh, Natalia Biere, Charles M A P Franz, Gyu-Sung Cho
{"title":"Lelliottia wanjuensis sp.","authors":"Jiyeon Lee, Eewon Tai, Sunyoung Jeong, Ile Kim, Bo-Eun Kim, Myeong-In Jeong, Kwang-Kyo Oh, Natalia Biere, Charles M A P Franz, Gyu-Sung Cho","doi":"10.1007/s00284-024-03911-6","DOIUrl":null,"url":null,"abstract":"<p><p>Ten Gram stain-negative, oxidase-negative, catalase-positive, rod-shaped strains were isolated from lettuce in the city Wanju in South Korea. Comparative 16S rRNA gene analysis and multilocus sequence analysis indicated that the strains grouped closely together with all other Lelliottia (L.)-type strains. The average nucleotide identity (ANI) comparisons of the isolates showed a high relationship between the strains, as the ANI values of all strains ranged from 91.01 to 91.31% when compared to the L. jeotgali-type strain PFL01<sup>T</sup>. All isolates showed the highest genomic DNA sequence similarity to the L. jeotgali PFL01<sup>T </sup>strain at 43.3% when compared with digital DNA-DNA hybridization (dDDH). Strain V104_15<sup>T </sup>of the proposed novel Lelliottia species showed 91.2% and 43.3% similarity with the most closely related L. jeotgali PFL01<sup>T</sup>-type strain in the ANI and dDDH comparisons, respectively. Strain V104_15<sup>T</sup> could not grow at 45 °C and 7% NaCl, while L. jeotgali PFL01<sup>T</sup> strain could grow at both these conditions. Strain V104_15<sup>T</sup> showed ß-glucosidase activity but not α-glucosidase activity, while the L. jeotgali PFL01<sup>T</sup> strain was α-glucosidase positive but ß-glucosidase negative. The major cellular fatty acids of strain V104_15<sup>T</sup> were C<sub>16:0</sub> and cyclo-C<sub>17:0</sub> including summed features. The mol % G + C content of the genomic DNA of strain V104_15<sup>T</sup> was 55.74%. Phenotypic and biochemical characteristics, as well as the phylogenomic analysis indicated that the strain V104_15<sup>T</sup> represents a novel species of the genus Lelliottia, for which the name Lelliottia wanjuensis sp. nov. is proposed. The type strain is V104_15<sup>T</sup> (= LMG 32996<sup> T</sup> = DSM 115585<sup> T</sup>).</p>","PeriodicalId":2,"journal":{"name":"ACS Applied Bio Materials","volume":null,"pages":null},"PeriodicalIF":4.6000,"publicationDate":"2024-09-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11438706/pdf/","citationCount":"0","resultStr":"{\"title\":\"Lelliottia wanjuensis sp. nov. 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All isolates showed the highest genomic DNA sequence similarity to the L. jeotgali PFL01<sup>T </sup>strain at 43.3% when compared with digital DNA-DNA hybridization (dDDH). Strain V104_15<sup>T </sup>of the proposed novel Lelliottia species showed 91.2% and 43.3% similarity with the most closely related L. jeotgali PFL01<sup>T</sup>-type strain in the ANI and dDDH comparisons, respectively. Strain V104_15<sup>T</sup> could not grow at 45 °C and 7% NaCl, while L. jeotgali PFL01<sup>T</sup> strain could grow at both these conditions. Strain V104_15<sup>T</sup> showed ß-glucosidase activity but not α-glucosidase activity, while the L. jeotgali PFL01<sup>T</sup> strain was α-glucosidase positive but ß-glucosidase negative. The major cellular fatty acids of strain V104_15<sup>T</sup> were C<sub>16:0</sub> and cyclo-C<sub>17:0</sub> including summed features. The mol % G + C content of the genomic DNA of strain V104_15<sup>T</sup> was 55.74%. 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引用次数: 0
摘要
从韩国万州市的莴苣中分离出了十株革兰氏染色阴性、氧化酶阴性、过氧化氢酶阳性的杆状菌株。16S rRNA 基因比较分析和多焦点序列分析表明,这些菌株与所有其他 Lelliottia(L. )型菌株密切相关。与 L. jeotgali-type 株系 PFL01T 相比,所有株系的平均核苷酸同一性(ANI)值从 91.01% 到 91.31% 不等。通过数字 DNA-DNA 杂交(dDDH),所有分离株与 L. jeotgali PFL01T 株系的基因组 DNA 序列相似度最高,为 43.3%。在 ANI 和 dDDH 比较中,拟议的 Lelliottia 新种菌株 V104_15T 与亲缘关系最密切的 L. jeotgali PFL01T 型菌株的相似度分别为 91.2% 和 43.3%。V104_15T 菌株不能在 45 °C 和 7% NaCl 的条件下生长,而 L. jeotgali PFL01T 菌株可以在这两种条件下生长。V104_15T 菌株具有ß-葡萄糖苷酶活性,但没有α-葡萄糖苷酶活性,而 L. jeotgali PFL01T 菌株具有α-葡萄糖苷酶活性,但没有ß-葡萄糖苷酶活性。V104_15T 菌株的主要细胞脂肪酸为 C16:0 和环-C17:0,包括总和特征。菌株 V104_15T 基因组 DNA 的 G + C 含量为 55.74%。表型和生化特征以及系统发生组分析表明,菌株 V104_15T 代表了 Lelliottia 属的一个新物种,因此将其命名为 Lelliottia wanjuensis sp.模式菌株为 V104_15T (= LMG 32996 T = DSM 115585 T)。
Lelliottia wanjuensis sp. nov. Isolated from Korean Lettuce in Wanju, South Korea.
Ten Gram stain-negative, oxidase-negative, catalase-positive, rod-shaped strains were isolated from lettuce in the city Wanju in South Korea. Comparative 16S rRNA gene analysis and multilocus sequence analysis indicated that the strains grouped closely together with all other Lelliottia (L.)-type strains. The average nucleotide identity (ANI) comparisons of the isolates showed a high relationship between the strains, as the ANI values of all strains ranged from 91.01 to 91.31% when compared to the L. jeotgali-type strain PFL01T. All isolates showed the highest genomic DNA sequence similarity to the L. jeotgali PFL01T strain at 43.3% when compared with digital DNA-DNA hybridization (dDDH). Strain V104_15T of the proposed novel Lelliottia species showed 91.2% and 43.3% similarity with the most closely related L. jeotgali PFL01T-type strain in the ANI and dDDH comparisons, respectively. Strain V104_15T could not grow at 45 °C and 7% NaCl, while L. jeotgali PFL01T strain could grow at both these conditions. Strain V104_15T showed ß-glucosidase activity but not α-glucosidase activity, while the L. jeotgali PFL01T strain was α-glucosidase positive but ß-glucosidase negative. The major cellular fatty acids of strain V104_15T were C16:0 and cyclo-C17:0 including summed features. The mol % G + C content of the genomic DNA of strain V104_15T was 55.74%. Phenotypic and biochemical characteristics, as well as the phylogenomic analysis indicated that the strain V104_15T represents a novel species of the genus Lelliottia, for which the name Lelliottia wanjuensis sp. nov. is proposed. The type strain is V104_15T (= LMG 32996 T = DSM 115585 T).