在器官尺度生长和重塑的约束混合物模型中对历史变量进行自适应整合。

IF 2.2 4区 医学 Q3 ENGINEERING, BIOMEDICAL
Amadeus M. Gebauer, Martin R. Pfaller, Jason M. Szafron, Wolfgang A. Wall
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引用次数: 0

摘要

过去几十年来,人们开发了许多计算模型来预测软组织生长和重塑(G&R)。约束混合物理论描述了软组织生长与重塑的基本机械生物学过程,并被广泛应用于心血管的生长与重塑模型。然而,即使经过二十年的努力,大型器官尺度模型仍然很少见,主要原因是计算成本高(模型评估和内存消耗),尤其是在长程模拟中。我们提出了两种策略,将历史变量自适应地整合到约束混合物模型中,从而实现大器官尺度的 G&R 模拟。这两种策略都利用了沉积组织对当前混合物的影响会随着时间的推移通过降解而减小这一特点。其中一种策略独立于外部负载,允许在模拟之前对计算资源进行估算。另一种策略则根据当地的机械生物学环境调整历史快照,从而控制额外的整合误差,即使在具有严重扰动的 G&R 情景中,也能将其保持在可忽略不计的小范围内。我们在一个组织斑块上分析了自适应集成的受限混合模型,以进行参数研究,并展示了不同 G&R 情景下的性能。为了证实自适应策略能够实现大器官尺度的示例,我们展示了不同高血压条件下的模拟结果,并使用有限元网格离散化的双心室心脏作为真实世界的示例。在我们的例子中,自适应积分将模拟速度提高了三倍,内存需求减少到六分之一。对于较长时间的模拟,计算成本的降低更为明显。对历史变量进行自适应积分,可以研究分辨率更高的模型和更长的 G&R 周期,而计算成本却大幅降低,并且在时间上基本保持不变。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Adaptive integration of history variables in constrained mixture models for organ-scale growth and remodeling

Adaptive integration of history variables in constrained mixture models for organ-scale growth and remodeling

In the last decades, many computational models have been developed to predict soft tissue growth and remodeling (G&R). The constrained mixture theory describes fundamental mechanobiological processes in soft tissue G&R and has been widely adopted in cardiovascular models of G&R. However, even after two decades of work, large organ-scale models are rare, mainly due to high computational costs (model evaluation and memory consumption), especially in long-range simulations. We propose two strategies to adaptively integrate history variables in constrained mixture models to enable large organ-scale simulations of G&R. Both strategies exploit that the influence of deposited tissue on the current mixture decreases over time through degradation. One strategy is independent of external loading, allowing the estimation of the computational resources ahead of the simulation. The other adapts the history snapshots based on the local mechanobiological environment so that the additional integration errors can be controlled and kept negligibly small, even in G&R scenarios with severe perturbations. We analyze the adaptively integrated constrained mixture model on a tissue patch for a parameter study and show the performance under different G&R scenarios. To confirm that adaptive strategies enable large organ-scale examples, we show simulations of different hypertension conditions with a real-world example of a biventricular heart discretized with a finite element mesh. In our example, adaptive integrations sped up simulations by a factor of three and reduced memory requirements to one-sixth. The reduction of the computational costs gets even more pronounced for simulations over longer periods. Adaptive integration of the history variables allows studying more finely resolved models and longer G&R periods while computational costs are drastically reduced and largely constant in time.

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来源期刊
International Journal for Numerical Methods in Biomedical Engineering
International Journal for Numerical Methods in Biomedical Engineering ENGINEERING, BIOMEDICAL-MATHEMATICAL & COMPUTATIONAL BIOLOGY
CiteScore
4.50
自引率
9.50%
发文量
103
审稿时长
3 months
期刊介绍: All differential equation based models for biomedical applications and their novel solutions (using either established numerical methods such as finite difference, finite element and finite volume methods or new numerical methods) are within the scope of this journal. Manuscripts with experimental and analytical themes are also welcome if a component of the paper deals with numerical methods. Special cases that may not involve differential equations such as image processing, meshing and artificial intelligence are within the scope. Any research that is broadly linked to the wellbeing of the human body, either directly or indirectly, is also within the scope of this journal.
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