Dáša Straková, Cristina Sánchez-Porro, Rafael R de la Haba, Antonio Ventosa
{"title":"将 Halomicroarcula saliterrae Straková et al. 2024 和 Halomicroarcula onubensis Straková et al. 2024 重新分类为 Haloarcula 属,分别命名为 Haloarcula saliterrae comb.","authors":"Dáša Straková, Cristina Sánchez-Porro, Rafael R de la Haba, Antonio Ventosa","doi":"10.1099/ijsem.0.006510","DOIUrl":null,"url":null,"abstract":"<p><p>The haloarchaeal genera <i>Halomicroarcula</i> and <i>Haloarcula</i>, belonging to the family <i>Haloarculaceae</i>, order <i>Halobacteriales</i>, class <i>Halobacteria</i>, within the phylum <i>Methanobacteriota</i>, have previously exhibited significant phylogenetic and taxonomic overlaps. This issue was recently resolved by merging the two genera into a single genus, <i>Haloarcula</i>. However, <i>Halomicroarcula saliterrae</i> and <i>Halomicroarcula onubensis</i> were described almost simultaneously with the proposal to unify the genera <i>Haloarcula</i> and <i>Halomicroarcula</i>. Their names were validly published under the International Code of Nomenclature of Prokaryotes (ICNP) according to Validation List no. 217, alongside six <i>Haloarcula</i> species and the transfer of the existing <i>Halomicroarcula</i> species into the genus <i>Haloarcula</i>. Therefore a phylogenetic, phylogenomic, and comparative genomic analysis was carried out to clarify the taxonomic status of these two haloarchaeal species, <i>Halomicroarcula saliterrae</i> and <i>Halomicroarcula onubensis</i>, with lower priority than the six new species of the genus <i>Haloarcula</i>. Phylogenetic studies of 16S rRNA and <i>rpoB'</i> gene sequences, along with phylogenomic reconstructions using single-copy core-orthologous proteins, indicated that the two species clustered with the members of the genus <i>Haloarcula</i>. The overall genome relatedness indexes (OGRIs), comparative analyses of phenotypic features, and polar lipid profiles further supported their taxonomic reassignment as two separate species within the genus <i>Haloarcula</i>. Consequently, we propose the reclassification of <i>Halomicroarcula saliterrae</i> Straková <i>et al</i>. 2024 and <i>Halomicroarcula onubensis</i> Straková <i>et al</i>. 2024 into the genus <i>Haloarcula</i>, as <i>Haloarcula saliterrae</i> comb. nov. and <i>Haloarcula onubensis</i> comb. nov., respectively, in accordance with the ICNP.</p>","PeriodicalId":2,"journal":{"name":"ACS Applied Bio Materials","volume":null,"pages":null},"PeriodicalIF":4.6000,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Reclassification of <i>Halomicroarcula saliterrae</i> Straková <i>et al</i>. 2024 and <i>Halomicroarcula onubensis</i> Straková <i>et al</i>. 2024 into the genus <i>Haloarcula</i>, as <i>Haloarcula saliterrae</i> comb. nov. and <i>Haloarcula onubensis</i> comb. nov., respectively.\",\"authors\":\"Dáša Straková, Cristina Sánchez-Porro, Rafael R de la Haba, Antonio Ventosa\",\"doi\":\"10.1099/ijsem.0.006510\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>The haloarchaeal genera <i>Halomicroarcula</i> and <i>Haloarcula</i>, belonging to the family <i>Haloarculaceae</i>, order <i>Halobacteriales</i>, class <i>Halobacteria</i>, within the phylum <i>Methanobacteriota</i>, have previously exhibited significant phylogenetic and taxonomic overlaps. This issue was recently resolved by merging the two genera into a single genus, <i>Haloarcula</i>. However, <i>Halomicroarcula saliterrae</i> and <i>Halomicroarcula onubensis</i> were described almost simultaneously with the proposal to unify the genera <i>Haloarcula</i> and <i>Halomicroarcula</i>. Their names were validly published under the International Code of Nomenclature of Prokaryotes (ICNP) according to Validation List no. 217, alongside six <i>Haloarcula</i> species and the transfer of the existing <i>Halomicroarcula</i> species into the genus <i>Haloarcula</i>. Therefore a phylogenetic, phylogenomic, and comparative genomic analysis was carried out to clarify the taxonomic status of these two haloarchaeal species, <i>Halomicroarcula saliterrae</i> and <i>Halomicroarcula onubensis</i>, with lower priority than the six new species of the genus <i>Haloarcula</i>. Phylogenetic studies of 16S rRNA and <i>rpoB'</i> gene sequences, along with phylogenomic reconstructions using single-copy core-orthologous proteins, indicated that the two species clustered with the members of the genus <i>Haloarcula</i>. The overall genome relatedness indexes (OGRIs), comparative analyses of phenotypic features, and polar lipid profiles further supported their taxonomic reassignment as two separate species within the genus <i>Haloarcula</i>. Consequently, we propose the reclassification of <i>Halomicroarcula saliterrae</i> Straková <i>et al</i>. 2024 and <i>Halomicroarcula onubensis</i> Straková <i>et al</i>. 2024 into the genus <i>Haloarcula</i>, as <i>Haloarcula saliterrae</i> comb. nov. and <i>Haloarcula onubensis</i> comb. nov., respectively, in accordance with the ICNP.</p>\",\"PeriodicalId\":2,\"journal\":{\"name\":\"ACS Applied Bio Materials\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":4.6000,\"publicationDate\":\"2024-09-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"ACS Applied Bio Materials\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1099/ijsem.0.006510\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"MATERIALS SCIENCE, BIOMATERIALS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"ACS Applied Bio Materials","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1099/ijsem.0.006510","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"MATERIALS SCIENCE, BIOMATERIALS","Score":null,"Total":0}
Reclassification of Halomicroarcula saliterrae Straková et al. 2024 and Halomicroarcula onubensis Straková et al. 2024 into the genus Haloarcula, as Haloarcula saliterrae comb. nov. and Haloarcula onubensis comb. nov., respectively.
The haloarchaeal genera Halomicroarcula and Haloarcula, belonging to the family Haloarculaceae, order Halobacteriales, class Halobacteria, within the phylum Methanobacteriota, have previously exhibited significant phylogenetic and taxonomic overlaps. This issue was recently resolved by merging the two genera into a single genus, Haloarcula. However, Halomicroarcula saliterrae and Halomicroarcula onubensis were described almost simultaneously with the proposal to unify the genera Haloarcula and Halomicroarcula. Their names were validly published under the International Code of Nomenclature of Prokaryotes (ICNP) according to Validation List no. 217, alongside six Haloarcula species and the transfer of the existing Halomicroarcula species into the genus Haloarcula. Therefore a phylogenetic, phylogenomic, and comparative genomic analysis was carried out to clarify the taxonomic status of these two haloarchaeal species, Halomicroarcula saliterrae and Halomicroarcula onubensis, with lower priority than the six new species of the genus Haloarcula. Phylogenetic studies of 16S rRNA and rpoB' gene sequences, along with phylogenomic reconstructions using single-copy core-orthologous proteins, indicated that the two species clustered with the members of the genus Haloarcula. The overall genome relatedness indexes (OGRIs), comparative analyses of phenotypic features, and polar lipid profiles further supported their taxonomic reassignment as two separate species within the genus Haloarcula. Consequently, we propose the reclassification of Halomicroarcula saliterrae Straková et al. 2024 and Halomicroarcula onubensis Straková et al. 2024 into the genus Haloarcula, as Haloarcula saliterrae comb. nov. and Haloarcula onubensis comb. nov., respectively, in accordance with the ICNP.