Dongyang Li, Dorji Phurbu, Xuan Zhang, Zi-Xuan Liu, Rui Wang, Yan-Yan Zheng, Yu-Guang Zhou, Ya-Jing Yu, Lu Xue, Ai-Hua Li
{"title":"从中国青藏高原盐湖中分离出的西藏维吉巴菌(Virgibacillus tibetensis sp.","authors":"Dongyang Li, Dorji Phurbu, Xuan Zhang, Zi-Xuan Liu, Rui Wang, Yan-Yan Zheng, Yu-Guang Zhou, Ya-Jing Yu, Lu Xue, Ai-Hua Li","doi":"10.1099/ijsem.0.006525","DOIUrl":null,"url":null,"abstract":"<p><p>One bacterial strain, designated as C22-A2<sup>T</sup>, was isolated from Lake LungmuCo in Tibet. Cells of strain C22-A2<sup>T</sup> were long rod-shaped, Gram-stain-negative, non-spore-forming, with positive catalase and oxidase activity. Optimal growth occurred at 20-25 °C, pH 8.0 and with 3.0-7.0% (w/v) NaCl. Phylogenetic analysis of 16S rRNA gene and whole genome sequences revealed that strain C22-A2<sup>T</sup> belonged to the genus <i>Virgibacillus</i>, showing the highest 16S rRNA gene similarity to <i>Virgibacillus halodenitrificans</i> DSM 10037<sup>T</sup> (97.6%). The average nucleotide identity values between strain C22-A2<sup>T</sup> and the type strains of related species in the genus <i>Virgibacillus</i> were less than 74.4% and the digital DNA-DNA hybridization values were less than 20.2%, both below the species delineation thresholds of 95 and 70% respectively. The genome analysis revealed that strain C22-A2<sup>T</sup> harboured genes responsible for osmotic and oxidative stress, enabling it to adapt to its surrounding environment. In terms of biochemical and physiological characteristics, strain C22-A2<sup>T</sup> shared similar characteristics with the genus <i>Virgibacillus,</i> including the predominant cellular fatty acid anteiso-C<sub>15 : 0</sub>, the major respiratory quinone MK-7, as well as the polar lipids phosphatidylglycerol and diphosphatidylglycerol. Based on the comprehensive analysis of phylogenetic, phylogenomic, morphological, physiological and biochemical characteristics, strain C22-A2<sup>T</sup> is proposed to represent a novel species of the genus <i>Virgibacillus</i>, named as <i>Virgibacillus tibetensis</i> sp. nov. (=CGMCC 1.19202<sup>T</sup>=KCTC 43426<sup>T</sup>).</p>","PeriodicalId":2,"journal":{"name":"ACS Applied Bio Materials","volume":null,"pages":null},"PeriodicalIF":4.6000,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11419321/pdf/","citationCount":"0","resultStr":"{\"title\":\"<i>Virgibacillus tibetensis</i> sp. nov., isolated from salt lake on the Tibetan plateau of China.\",\"authors\":\"Dongyang Li, Dorji Phurbu, Xuan Zhang, Zi-Xuan Liu, Rui Wang, Yan-Yan Zheng, Yu-Guang Zhou, Ya-Jing Yu, Lu Xue, Ai-Hua Li\",\"doi\":\"10.1099/ijsem.0.006525\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>One bacterial strain, designated as C22-A2<sup>T</sup>, was isolated from Lake LungmuCo in Tibet. Cells of strain C22-A2<sup>T</sup> were long rod-shaped, Gram-stain-negative, non-spore-forming, with positive catalase and oxidase activity. Optimal growth occurred at 20-25 °C, pH 8.0 and with 3.0-7.0% (w/v) NaCl. Phylogenetic analysis of 16S rRNA gene and whole genome sequences revealed that strain C22-A2<sup>T</sup> belonged to the genus <i>Virgibacillus</i>, showing the highest 16S rRNA gene similarity to <i>Virgibacillus halodenitrificans</i> DSM 10037<sup>T</sup> (97.6%). The average nucleotide identity values between strain C22-A2<sup>T</sup> and the type strains of related species in the genus <i>Virgibacillus</i> were less than 74.4% and the digital DNA-DNA hybridization values were less than 20.2%, both below the species delineation thresholds of 95 and 70% respectively. The genome analysis revealed that strain C22-A2<sup>T</sup> harboured genes responsible for osmotic and oxidative stress, enabling it to adapt to its surrounding environment. In terms of biochemical and physiological characteristics, strain C22-A2<sup>T</sup> shared similar characteristics with the genus <i>Virgibacillus,</i> including the predominant cellular fatty acid anteiso-C<sub>15 : 0</sub>, the major respiratory quinone MK-7, as well as the polar lipids phosphatidylglycerol and diphosphatidylglycerol. Based on the comprehensive analysis of phylogenetic, phylogenomic, morphological, physiological and biochemical characteristics, strain C22-A2<sup>T</sup> is proposed to represent a novel species of the genus <i>Virgibacillus</i>, named as <i>Virgibacillus tibetensis</i> sp. nov. (=CGMCC 1.19202<sup>T</sup>=KCTC 43426<sup>T</sup>).</p>\",\"PeriodicalId\":2,\"journal\":{\"name\":\"ACS Applied Bio Materials\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":4.6000,\"publicationDate\":\"2024-09-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11419321/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"ACS Applied Bio Materials\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1099/ijsem.0.006525\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"MATERIALS SCIENCE, BIOMATERIALS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"ACS Applied Bio Materials","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1099/ijsem.0.006525","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"MATERIALS SCIENCE, BIOMATERIALS","Score":null,"Total":0}
Virgibacillus tibetensis sp. nov., isolated from salt lake on the Tibetan plateau of China.
One bacterial strain, designated as C22-A2T, was isolated from Lake LungmuCo in Tibet. Cells of strain C22-A2T were long rod-shaped, Gram-stain-negative, non-spore-forming, with positive catalase and oxidase activity. Optimal growth occurred at 20-25 °C, pH 8.0 and with 3.0-7.0% (w/v) NaCl. Phylogenetic analysis of 16S rRNA gene and whole genome sequences revealed that strain C22-A2T belonged to the genus Virgibacillus, showing the highest 16S rRNA gene similarity to Virgibacillus halodenitrificans DSM 10037T (97.6%). The average nucleotide identity values between strain C22-A2T and the type strains of related species in the genus Virgibacillus were less than 74.4% and the digital DNA-DNA hybridization values were less than 20.2%, both below the species delineation thresholds of 95 and 70% respectively. The genome analysis revealed that strain C22-A2T harboured genes responsible for osmotic and oxidative stress, enabling it to adapt to its surrounding environment. In terms of biochemical and physiological characteristics, strain C22-A2T shared similar characteristics with the genus Virgibacillus, including the predominant cellular fatty acid anteiso-C15 : 0, the major respiratory quinone MK-7, as well as the polar lipids phosphatidylglycerol and diphosphatidylglycerol. Based on the comprehensive analysis of phylogenetic, phylogenomic, morphological, physiological and biochemical characteristics, strain C22-A2T is proposed to represent a novel species of the genus Virgibacillus, named as Virgibacillus tibetensis sp. nov. (=CGMCC 1.19202T=KCTC 43426T).