解密口腔蛇形担子菌中与岩藻糖基化蛋白相连的 O 型聚糖:核磁共振光谱学和糖蛋白组学的启示。

IF 3.4 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
Stephanie Walcher, Fiona F Hager-Mair, Johannes Stadlmann, Hanspeter Kählig, Christina Schäffer
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引用次数: 0

摘要

蛇形坦奈氏菌是一种与健康有关的革兰氏阴性口腔厌氧菌,其系统发育上的近亲是牙周病原体连翘坦奈氏菌。该病原体通过蛋白质 O-糖基化进行糖模拟,显示出末端的壬磺酸,有助于逃避宿主的免疫识别。与连翘菌一样,蛇形酵母菌细胞也覆盖着由两种丰富的 S 层糖蛋白--TssA 和 TssB 组成的二维晶体 S 层。在这项研究中,我们利用一维和二维核磁共振光谱分析了蛇形蓟马的 S 层糖肽和β-消除糖,从而阐明了蛇形蓟马的 O 链糖蛋白结构。我们发现 T.serpentiformis 产生两种高度岩藻糖基化的支链糖型,其结构为[2-OMe-Fuc-(α1,2)]-4-OMe-Glc-(β1、3)-[Fuc-(α1,4)]-2-NAc-GlcA-(β1,4)-[3-NH2,2,4-OMe-Fuc-(α1,3)]-Fuc-(α1,4)-Xyl-(β1,4)-[3-OMe-Fuc-(α1,3)]-GlcA-(α1,2)-[Rha-(α1,4)]-Gal,其中 3OMe-Fuc 是可变的;每种糖型都含有一种罕见的 2,4-甲氧基 3-氨基修饰岩藻糖。这些糖型支持了壬磺酸是致病丹那丝菌特征的假设。糖蛋白组学和生物信息学相结合的方法确定了 TssA(14 个位点)和 TssB(21 个位点)中多个位点的 O-糖基化。液相色谱-质谱/质谱(LC-MS/MS)证实,在丹那菌中存在类杆菌O-糖基化基团(D)(S/T) (L/V/T/A/I),包括新发现的第三个位置的候选 "N"。建立的 S 层糖蛋白 Alphfold2 模型显示,在糖蛋白组学支持的蛋白质 N 端三分之二处,两种糖基形式的空间分布几乎一致,糖基朝外。糖蛋白组学确定了 921 个独特的糖肽序列,对应于 303 个独特的 UniProt ID。对整个蛇尾藻蛋白质组进行的GO项富集分析将这些蛋白质主要归类为膜和细胞外围相关糖蛋白,从而支持了蛇尾藻的一般蛋白质O-糖基化系统。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Deciphering fucosylated protein-linked O-glycans in oral Tannerella serpentiformis: Insights from NMR spectroscopy and glycoproteomics.

Tannerella serpentiformis is a health-associated Gram-negative oral anaerobe, while its closest phylogenetic relative is the periodontal pathogen Tannerella forsythia. The pathogen employs glycan mimicry through protein O-glycosylation, displaying a terminal nonulosonic acid aiding in evasion of host immune recognition. Like T. forsythia, T. serpentiformis cells are covered with a 2D-crystalline S-layer composed of two abundant S-layer glycoproteins-TssA and TssB. In this study, we elucidated the structure of the O-linked glycans of T. serpentiformis using 1D and 2D NMR spectroscopy analyzing S-layer glycopeptides and β-eliminated glycans. We found that T. serpentiformis produces two highly fucosylated, branched glycoforms carrying non-carbohydrate modifications, with the structure [2-OMe-Fuc-(α1,2)]-4-OMe-Glc-(β1,3)-[Fuc-(α1,4)]-2-NAc-GlcA-(β1,4)-[3-NH2, 2,4-OMe-Fuc-(α1,3)]-Fuc-(α1,4)-Xyl-(β1,4)-[3-OMe-Fuc-(α1,3)]-GlcA-(α1,2)-[Rha-(α1,4]-Gal, where the 3OMe-Fuc is variable; each glycoform contains a rare 2,4-methoxy, 3-amino-modified fucose. These glycoforms support the hypothesis that nonulosonic acid is a hallmark of pathogenic Tannerella species. A combined glycoproteomics and bioinformatics approach identified multiple sites within TssA (14 sites) and TssB (21 sites) to be O-glycosylated. LC-MS/MS confirmed the presence of the Bacteroidetes O-glycosylation motif (D)(S/T) (L/V/T/A/I) in Tannerella species, including the newly identified candidate "N" for the third position. Alphfold2 models of the S-layer glycoproteins were created revealing an almost uniform spatial distribution of the two glycoforms at the N-terminal two thirds of the proteins supported by glycoproteomics, with glycans facing outward. Glycoproteomics identified 921 unique glycopeptide sequences corresponding to 303 unique UniProt IDs. GO-term enrichment analysis versus the entire T. serpentiformis proteome classified these proteins as mainly membrane and cell periphery-associated glycoproteins, supporting a general protein O-glycosylation system in T. serpentiformis.

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来源期刊
Glycobiology
Glycobiology 生物-生化与分子生物学
CiteScore
7.50
自引率
4.70%
发文量
73
审稿时长
3 months
期刊介绍: Established as the leading journal in the field, Glycobiology provides a unique forum dedicated to research into the biological functions of glycans, including glycoproteins, glycolipids, proteoglycans and free oligosaccharides, and on proteins that specifically interact with glycans (including lectins, glycosyltransferases, and glycosidases). Glycobiology is essential reading for researchers in biomedicine, basic science, and the biotechnology industries. By providing a single forum, the journal aims to improve communication between glycobiologists working in different disciplines and to increase the overall visibility of the field.
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