Jovana Chiapetti Tartari, Asif Khan, João Gabriel da Silva Andrade, Francielli Abigail Vilugron Rodrigues, Paulo Sérgio Alves Bueno, Diego de Souza Lima, Fernanda Canduri, Gisele de Freitas Gauze, Érika Seki Kioshima, Flavio Augusto Vicente Seixas
{"title":"预测针对巴西副球孢子虫的新型高丝氨酸脱氢酶抑制剂:综合利用硅学和体外方法。","authors":"Jovana Chiapetti Tartari, Asif Khan, João Gabriel da Silva Andrade, Francielli Abigail Vilugron Rodrigues, Paulo Sérgio Alves Bueno, Diego de Souza Lima, Fernanda Canduri, Gisele de Freitas Gauze, Érika Seki Kioshima, Flavio Augusto Vicente Seixas","doi":"10.1080/17460913.2024.2398332","DOIUrl":null,"url":null,"abstract":"<p><p><b>Aim:</b> To search for potential inhibitors to homoserine dehydrogenase (HSD) in <i>Paracoccidioides brasiliensis</i> the causative agent of paracoccidioidomycosis, an infection with a high mortality rate in Brazil.<b>Materials & methods:</b> The enzyme was modeled and used in the virtual screening of the compounds. The library was first screened by the Autodock, in which 66 molecules were better ranked than substrate, and then, also evaluated by the Molegro and Gold programs.<b>Results:</b> The HS23 and HS87 molecules were selected in common by the three programs, and ADME/Tox evaluation indicates they are not toxic. The molecular dynamics of <i>Pb</i>HSD bonded to ligands showed stable complexes until 50 ns. To validate the results, compounds were purchased for assays of minimum inhibitory concentration (MIC), minimum fungicidal concentration (MFC), synergic profile with Amphotericin B (AmB) and cytotoxicity. The two molecules presented MIC of 32 μg/ml and MFC of 64 μg/ml against the <i>P. brasiliensis</i> (strain Pb18). They also showed synergistic activity with AmB and a lack of toxicity against Hela and Vero cell lines.<b>Conclusion:</b> These results suggest that the HS23 and HS87 are promising candidates as <i>Pb</i>HSD inhibitors and may be used as hits for the development of new drugs against paracoccidioidomycosis.</p>","PeriodicalId":2,"journal":{"name":"ACS Applied Bio Materials","volume":null,"pages":null},"PeriodicalIF":4.6000,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11492677/pdf/","citationCount":"0","resultStr":"{\"title\":\"Predicting of novel homoserine dehydrogenase inhibitors against <i>Paracoccidioides brasiliensis</i>: integrating <i>in silico</i> and <i>in vitro</i> approaches.\",\"authors\":\"Jovana Chiapetti Tartari, Asif Khan, João Gabriel da Silva Andrade, Francielli Abigail Vilugron Rodrigues, Paulo Sérgio Alves Bueno, Diego de Souza Lima, Fernanda Canduri, Gisele de Freitas Gauze, Érika Seki Kioshima, Flavio Augusto Vicente Seixas\",\"doi\":\"10.1080/17460913.2024.2398332\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p><b>Aim:</b> To search for potential inhibitors to homoserine dehydrogenase (HSD) in <i>Paracoccidioides brasiliensis</i> the causative agent of paracoccidioidomycosis, an infection with a high mortality rate in Brazil.<b>Materials & methods:</b> The enzyme was modeled and used in the virtual screening of the compounds. The library was first screened by the Autodock, in which 66 molecules were better ranked than substrate, and then, also evaluated by the Molegro and Gold programs.<b>Results:</b> The HS23 and HS87 molecules were selected in common by the three programs, and ADME/Tox evaluation indicates they are not toxic. The molecular dynamics of <i>Pb</i>HSD bonded to ligands showed stable complexes until 50 ns. To validate the results, compounds were purchased for assays of minimum inhibitory concentration (MIC), minimum fungicidal concentration (MFC), synergic profile with Amphotericin B (AmB) and cytotoxicity. The two molecules presented MIC of 32 μg/ml and MFC of 64 μg/ml against the <i>P. brasiliensis</i> (strain Pb18). They also showed synergistic activity with AmB and a lack of toxicity against Hela and Vero cell lines.<b>Conclusion:</b> These results suggest that the HS23 and HS87 are promising candidates as <i>Pb</i>HSD inhibitors and may be used as hits for the development of new drugs against paracoccidioidomycosis.</p>\",\"PeriodicalId\":2,\"journal\":{\"name\":\"ACS Applied Bio Materials\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":4.6000,\"publicationDate\":\"2024-01-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11492677/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"ACS Applied Bio Materials\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1080/17460913.2024.2398332\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2024/9/13 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"Q2\",\"JCRName\":\"MATERIALS SCIENCE, BIOMATERIALS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"ACS Applied Bio Materials","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1080/17460913.2024.2398332","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/9/13 0:00:00","PubModel":"Epub","JCR":"Q2","JCRName":"MATERIALS SCIENCE, BIOMATERIALS","Score":null,"Total":0}
引用次数: 0
摘要
目的:寻找巴西副球孢子菌病(Paracoccidioidomycosis)的潜在同丝氨酸脱氢酶(HSD)抑制剂:对酶进行建模,并将其用于化合物的虚拟筛选。首先用 Autodock 对化合物库进行筛选,其中 66 个分子的排名优于底物,然后用 Molegro 和 Gold 程序进行评估:结果:HS23 和 HS87 分子被三个程序共同选中,并且 ADME/Tox 评估表明它们没有毒性。与配体结合的 PbHSD 的分子动力学显示,在 50 毫微秒之前,复合物是稳定的。为了验证结果,购买了化合物进行最低抑菌浓度(MIC)、最低杀菌浓度(MFC)、与两性霉素 B(AmB)的协同作用以及细胞毒性的检测。这两种分子对巴西痢疾杆菌(Pb18 株)的 MIC 为 32 μg/ml,MFC 为 64 μg/ml。它们还显示出与 AmB 的协同活性,且对 Hela 和 Vero 细胞系无毒性:这些结果表明,HS23 和 HS87 是很有希望的 PbHSD 抑制剂候选物,可作为开发抗副球孢子菌病新药的靶点。
Predicting of novel homoserine dehydrogenase inhibitors against Paracoccidioides brasiliensis: integrating in silico and in vitro approaches.
Aim: To search for potential inhibitors to homoserine dehydrogenase (HSD) in Paracoccidioides brasiliensis the causative agent of paracoccidioidomycosis, an infection with a high mortality rate in Brazil.Materials & methods: The enzyme was modeled and used in the virtual screening of the compounds. The library was first screened by the Autodock, in which 66 molecules were better ranked than substrate, and then, also evaluated by the Molegro and Gold programs.Results: The HS23 and HS87 molecules were selected in common by the three programs, and ADME/Tox evaluation indicates they are not toxic. The molecular dynamics of PbHSD bonded to ligands showed stable complexes until 50 ns. To validate the results, compounds were purchased for assays of minimum inhibitory concentration (MIC), minimum fungicidal concentration (MFC), synergic profile with Amphotericin B (AmB) and cytotoxicity. The two molecules presented MIC of 32 μg/ml and MFC of 64 μg/ml against the P. brasiliensis (strain Pb18). They also showed synergistic activity with AmB and a lack of toxicity against Hela and Vero cell lines.Conclusion: These results suggest that the HS23 and HS87 are promising candidates as PbHSD inhibitors and may be used as hits for the development of new drugs against paracoccidioidomycosis.