极度濒危燕鹦鹉（Lathamus discolor）的参考基因组、线粒体基因组和相关转录组。

Q2 Pharmacology, Toxicology and Pharmaceutics

F1000Research Pub Date : 2024-08-27 eCollection Date: 2024-01-01 DOI:10.12688/f1000research.144352.2

Luke W Silver, Dejan Stojanovic, Katherine A Farquharson, Lauren Alexander, Emma Peel, Katherine Belov, Carolyn J Hogg

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引用次数: 0

摘要

雨燕（Lathamus discolor）是一种极度濒危的候鸟，在塔斯马尼亚繁殖，在澳大利亚大陆越冬。在此，我们提供了雨燕的参考基因组组装。我们对 PacBio HiFi 读数进行测序，以创建高质量的参考组，并确定完整的线粒体序列。我们还从五个器官中生成了参考转录组，为基因组注释提供信息。基因组长度为 1.24 Gb，由 847 个等位基因组成，等位基因 N50 为 18.97 Gb，L50 为 20 个等位基因。这项研究为雨燕提供了一个注释参考组和转录组资源，有助于未来的保护基因组研究。

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A reference genome, mitochondrial genome and associated transcriptomes for the critically endangered swift parrot ( Lathamus discolor).

The swift parrot ( Lathamus discolor) is a Critically Endangered migratory parrot that breeds in Tasmania and winters on the Australian mainland. Here we provide a reference genome assembly for the swift parrot. We sequence PacBio HiFi reads to create a high-quality reference assembly and identify a complete mitochondrial sequence. We also generate a reference transcriptome from five organs to inform genome annotation. The genome was 1.24 Gb in length and consisted of 847 contigs with a contig N50 of 18.97 Gb and L50 of 20 contigs. This study provides an annotated reference assembly and transcriptomic resources for the swift parrot to assist in future conservation genomic research.

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来源期刊

F1000Research Pharmacology, Toxicology and Pharmaceutics-Pharmacology, Toxicology and Pharmaceutics (all)

CiteScore

5.00

自引率

0.00%

发文量

1646

审稿时长

1 weeks

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