机器学习阐明了预测人类和小鼠背根神经节多发和单发神经元的电生理特性。

IF 2.7 3区 医学 Q3 NEUROSCIENCES
eNeuro Pub Date : 2024-10-03 Print Date: 2024-10-01 DOI:10.1523/ENEURO.0248-24.2024
Nesia A Zurek, Sherwin Thiyagarajan, Reza Ehsanian, Aleyah E Goins, Sachin Goyal, Mark Shilling, Christophe G Lambert, Karin N Westlund, Sascha R A Alles
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引用次数: 0

摘要

人类和小鼠背根神经节(hDRG 和 mDRG)神经元是了解痛觉和疼痛行为的分子和电生理机制的重要工具。神经元发射表型最简单的区别之一是单发射(只表现出一个动作电位)或多发射(表现出两个或多个动作电位)。为了确定单发和多发 hDRG 神经元在内在特性、点火表型和 AP 波形特性方面是否存在差异,以及这些特性是否可用于预测多发,我们通过全细胞贴片钳电生理学测量了来自 6 名男性和 4 名女性供体的 94 个 hDRG 神经元的 22 种电生理学特性。然后,我们使用几种机器学习模型对数据进行了分析,以确定这些特性是否可用于预测多重发火。我们使用蒙特卡洛交叉验证(Monte Carlo Cross Validation)的 1000 次迭代将数据分成不同的训练集和测试集,并测试了逻辑回归(Logistic Regression)、k-近邻(k-Nearest Neighbors)、随机森林(Random Forest)、支持向量分类器(Support Vector Classifier)和 XGBoost 机器学习模型。所有测试模型的平均准确率都超过了 80%,其中支持向量分类器和 XGBoost 的表现最好。我们发现,hDRG 神经元的多个特性与多重发火相关,这些特性可共同用于预测 hDRG 中的多重发火神经元,包括长衰减时间、低流变基数和长首次尖峰潜伏期。我们还发现,hDRG 模型能够以 90% 的准确率预测 mDRG 神经元的多重发火。了解这些特性有助于阐明与疼痛有关的外周感觉神经元的目标。我们的机器学习算法显示,在基线条件下,小鼠和人类的DRG神经元电生理学几乎没有物种差异。这些发现对于疼痛疗法开发过程中的神经元兴奋性研究非常重要。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Machine Learning Elucidates Electrophysiological Properties Predictive of Multi- and Single-Firing Human and Mouse Dorsal Root Ganglia Neurons.

Human and mouse dorsal root ganglia (hDRG and mDRG) neurons are important tools in understanding the molecular and electrophysiological mechanisms that underlie nociception and drive pain behaviors. One of the simplest differences in firing phenotypes is that neurons are single-firing (exhibit only one action potential) or multi-firing (exhibit 2 or more action potentials). To determine if single- and multi-firing hDRG neurons exhibit differences in intrinsic properties, firing phenotypes, and AP waveform properties, and if these properties could be used to predict multi-firing, we measured 22 electrophysiological properties by whole-cell patch-clamp electrophysiology of 94 hDRG neurons from six male and four female donors. We then analyzed the data using several machine learning models to determine if these properties could be used to predict multi-firing. We used 1,000 iterations of Monte Carlo cross-validation to split the data into different train and test sets and tested the logistic regression, k-nearest neighbors, random forest, support vector classifier, and XGBoost machine learning models. All models tested had a >80% accuracy on average, with support vector classifier, and XGBoost performing the best. We found that several properties correlated with multi-firing hDRG neurons and together could be used to predict multi-firing neurons in hDRG including a long decay time, a low rheobase, and long first spike latency. We also found that the hDRG models were able to predict multi-firing with 90% accuracy in mDRG neurons. Understanding these properties could be beneficial in the elucidation of targets on peripheral sensory neurons related to pain.

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来源期刊
eNeuro
eNeuro Neuroscience-General Neuroscience
CiteScore
5.00
自引率
2.90%
发文量
486
审稿时长
16 weeks
期刊介绍: An open-access journal from the Society for Neuroscience, eNeuro publishes high-quality, broad-based, peer-reviewed research focused solely on the field of neuroscience. eNeuro embodies an emerging scientific vision that offers a new experience for authors and readers, all in support of the Society’s mission to advance understanding of the brain and nervous system.
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