非离子碘化造影剂诱发超敏皮肤反应的全基因组关联研究。

IF 2.3 4区 医学 Q3 ALLERGY
Min-Rou Lin, Ting-Yuan Liu, Hsing-Yu Hsu, Yow-Wen Hsieh, Poppy Diah Palupi, Wan-Hsuan Chou, Pei-Pei Lau, Wei-Chiao Chang, Fuu-Jen Tsai
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引用次数: 0

摘要

背景:在台湾,非离子碘化造影剂(ICMs)是常用的造影剂,但偶尔也会引起严重的副作用。这些不良反应并不常见,再加上确定直接因果关系的复杂性,给遗传研究带来了巨大挑战:在全基因组范围内研究与非离子 ICMs 介导的皮肤反应相关的遗传因素:利用中国医科大学附属医院生物库的医院队列,使用 PLINK v1.9 进行了一项全面的全基因组关联研究(GWAS)。该研究包括两个不同的队列:一个队列基于药物不良反应(ADR)报告,捕捉即时反应;另一个队列基于自我报告,主要反映延迟反应。已知基因位点由 GWAS 目录确定。通过 FINEMAP 进行精细图谱绘制,以预测因果变异。用 clusterProfiler 进行了通路富集分析,以揭示已确定的遗传特征的生物学功能:基于 ADR 的队列包括 120 个病例和 3640 个对照。GWAS确定了6个候选风险位点,即rs150515068、rs6847491、rs192044153、rs191908641、rs376660317和rs368821335。由 275 例病例和 8338 例对照组成的基于自我报告的队列又发现了 36 个候选风险位点。精细图谱进一步确定了每个队列中的 4 个因果变异。通路分析表明,直接HSR相关基因与生长激素反应和信号传导有关,而非直接HSR基因则涉及神经传导:本研究为台湾人群中非离子型 ICM 诱导的皮肤反应的遗传基础提供了新的视角,表明导致即刻型和非即刻型 HSR 的基因可能具有不同的功能作用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Genome-wide association study of hypersensitivity skin reactions induced by nonionic iodinated contrast media.

Background: In Taiwan, nonionic iodinated contrast media (ICMs) are commonly used but can occasionally cause severe side effects. The infrequency of these adverse events, coupled with the complexities in establishing direct causality, poses significant challenges for genetic research.

Objective: : To investigate the genetic factors associated with skin reactions mediated by nonionic ICMs on a genome-wide scale.

Methods: A hospital-based cohort from the China Medical University Hospital biobank was utilized to conduct a comprehensive genome-wide association study (GWAS) using PLINK v1.9. The study incorporated two distinct cohorts: one based on adverse drug reaction (ADR) reports, capturing immediate reactions, and the other based on self-reports, which primarily reflected delayed reactions. Known loci were determined by the GWAS catalog. Fine mapping was conducted by FINEMAP to predict causal variants. Pathway enrichment analysis was performed by clusterProfiler to reveal the biological function of the identified genetic signatures.

Results: The ADR-based cohort included 120 cases and 3640 controls. GWAS identified 6 candidate risk loci, namely rs150515068, rs6847491, rs192044153, rs191908641, rs376660317, and rs368821335. The self-report-based cohort, consisting of 275 cases and 8338 controls, revealed 36 additional candidate risk loci. Fine mapping further identified 4 causal variants within each cohort. Pathway analysis showed that immediate HSR-related genes are linked to growth hormone response and signaling, while non-immediate HSR genes are involved in neurotransmission.

Conclusion: This study offers new perspectives on the genetic foundation of nonionic ICM-induced skin reactions within the Taiwanese population, suggesting that the genes contributing to immediate and non-immediate HSRs might have different functional roles.

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来源期刊
CiteScore
12.80
自引率
0.00%
发文量
74
审稿时长
>12 weeks
期刊介绍: The Asian Pacific Journal of Allergy and Immunology (APJAI) is an online open access journal with the recent impact factor (2018) 1.747 APJAI published 4 times per annum (March, June, September, December). Four issues constitute one volume. APJAI publishes original research articles of basic science, clinical science and reviews on various aspects of allergy and immunology. This journal is an official journal of and published by the Allergy, Asthma and Immunology Association, Thailand. The scopes include mechanism, pathogenesis, host-pathogen interaction, host-environment interaction, allergic diseases, immune-mediated diseases, epidemiology, diagnosis, treatment and prevention, immunotherapy, and vaccine. All papers are published in English and are refereed to international standards.
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