Guilherme T Braz, Lucas B Riboldi, Maísa S Pinto, Eliana R Forni-Martins, Juliana E C T Yassitepe, Ricardo A Dante, Isabel R Gerhardt
{"title":"重新审视Vellozia Vand.的细胞遗传学:KLN1的免疫定位阐明了该属的染色体数目","authors":"Guilherme T Braz, Lucas B Riboldi, Maísa S Pinto, Eliana R Forni-Martins, Juliana E C T Yassitepe, Ricardo A Dante, Isabel R Gerhardt","doi":"10.1101/2024.09.10.612026","DOIUrl":null,"url":null,"abstract":"Chromosome number is the most fundamental trait of a karyotype. Accurate chromosome counting is essential for further analyses including cytogenomics, taxonomic, evolutionary, and genomic studies. Despite its importance, miscounting is common, especially in early publications on species with small and morphologically similar chromosomes. <em>Vellozia</em> Vand. is a genus mainly distributed throughout South America belonging to the angiosperm family Velloziaceae, a dominant taxon in the Brazilian ″campos rupestres″. Cytogenetic studies within the group have been rare and have shown conflicting chromosome counts, even within the same species. These discrepancies are associated with the presence of a few small chromosome-like structures, which were previously classified as possible satellites. Here, to accurately determine the chromosome number of species belonging to the genus, we used different cytogenomics approaches, including the immunostaining of the KNL1 kinetochore protein combined with chromosome spread preparation using tissue culture-derived samples. Our results revealed 2n = 18 chromosomes for all six species studied. This finding suggests that the basic chromosome number for <em>Vellozia</em> is x = 9 and not x = 8, as previously proposed. The immunolocalization of functional centromeres was fundamental for undoubtedly identifying the smaller chromosome pair as real chromosomes and accurately determining the correct chromosome number of these species. This will provide substantial support for further studies, including investigations into karyotype evolution and the generation of reference genomes for the species of the family.","PeriodicalId":501341,"journal":{"name":"bioRxiv - Plant Biology","volume":"21 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Revisiting the cytogenetics of Vellozia Vand.: immunolocalization of KLN1 elucidates the chromosome number for the genus\",\"authors\":\"Guilherme T Braz, Lucas B Riboldi, Maísa S Pinto, Eliana R Forni-Martins, Juliana E C T Yassitepe, Ricardo A Dante, Isabel R Gerhardt\",\"doi\":\"10.1101/2024.09.10.612026\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Chromosome number is the most fundamental trait of a karyotype. Accurate chromosome counting is essential for further analyses including cytogenomics, taxonomic, evolutionary, and genomic studies. Despite its importance, miscounting is common, especially in early publications on species with small and morphologically similar chromosomes. <em>Vellozia</em> Vand. is a genus mainly distributed throughout South America belonging to the angiosperm family Velloziaceae, a dominant taxon in the Brazilian ″campos rupestres″. Cytogenetic studies within the group have been rare and have shown conflicting chromosome counts, even within the same species. These discrepancies are associated with the presence of a few small chromosome-like structures, which were previously classified as possible satellites. Here, to accurately determine the chromosome number of species belonging to the genus, we used different cytogenomics approaches, including the immunostaining of the KNL1 kinetochore protein combined with chromosome spread preparation using tissue culture-derived samples. Our results revealed 2n = 18 chromosomes for all six species studied. This finding suggests that the basic chromosome number for <em>Vellozia</em> is x = 9 and not x = 8, as previously proposed. The immunolocalization of functional centromeres was fundamental for undoubtedly identifying the smaller chromosome pair as real chromosomes and accurately determining the correct chromosome number of these species. This will provide substantial support for further studies, including investigations into karyotype evolution and the generation of reference genomes for the species of the family.\",\"PeriodicalId\":501341,\"journal\":{\"name\":\"bioRxiv - Plant Biology\",\"volume\":\"21 1\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-09-13\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"bioRxiv - Plant Biology\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1101/2024.09.10.612026\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"bioRxiv - Plant Biology","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1101/2024.09.10.612026","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
摘要
染色体数目是核型最基本的特征。准确的染色体计数对于细胞遗传组学、分类学、进化和基因组研究等进一步分析至关重要。尽管其重要性不言而喻,但染色体数目计算错误却很常见,尤其是在早期发表的关于染色体较小且形态相似的物种的文章中。Vellozia Vand.属主要分布在南美洲各地,属于被子植物 Velloziaceae 科,是巴西″campos rupestres″中的主要分类群。该类植物的细胞遗传学研究很少见,即使在同一物种中,染色体数目也相互矛盾。这些差异与一些类似染色体的小结构的存在有关,这些结构以前被归类为可能的卫星。在此,为了准确确定该属物种的染色体数目,我们采用了不同的细胞基因组学方法,包括免疫染色 KNL1 动点蛋白和利用组织培养样本进行染色体扩增制备。我们的研究结果表明,所有六个物种的染色体都是 2n = 18。这一发现表明,Vellozia 的基本染色体数是 x = 9,而不是之前提出的 x = 8。功能性中心粒的免疫定位对于确定较小的染色体对为真正的染色体和准确确定这些物种的正确染色体数目无疑是至关重要的。这将为进一步的研究提供大量支持,包括研究核型进化和为该科物种生成参考基因组。
Revisiting the cytogenetics of Vellozia Vand.: immunolocalization of KLN1 elucidates the chromosome number for the genus
Chromosome number is the most fundamental trait of a karyotype. Accurate chromosome counting is essential for further analyses including cytogenomics, taxonomic, evolutionary, and genomic studies. Despite its importance, miscounting is common, especially in early publications on species with small and morphologically similar chromosomes. Vellozia Vand. is a genus mainly distributed throughout South America belonging to the angiosperm family Velloziaceae, a dominant taxon in the Brazilian ″campos rupestres″. Cytogenetic studies within the group have been rare and have shown conflicting chromosome counts, even within the same species. These discrepancies are associated with the presence of a few small chromosome-like structures, which were previously classified as possible satellites. Here, to accurately determine the chromosome number of species belonging to the genus, we used different cytogenomics approaches, including the immunostaining of the KNL1 kinetochore protein combined with chromosome spread preparation using tissue culture-derived samples. Our results revealed 2n = 18 chromosomes for all six species studied. This finding suggests that the basic chromosome number for Vellozia is x = 9 and not x = 8, as previously proposed. The immunolocalization of functional centromeres was fundamental for undoubtedly identifying the smaller chromosome pair as real chromosomes and accurately determining the correct chromosome number of these species. This will provide substantial support for further studies, including investigations into karyotype evolution and the generation of reference genomes for the species of the family.