利用 WGCNA 和机器学习算法确定婴儿血管瘤的潜在诊断和治疗目标

IF 2.1 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY
Chen Wang, Jiajie Chen, Xu Wang, Xinyu Liang, Shulin Yu, Yu Gui, Xi Wen, Huabing Zhang, Shengxiu Liu
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引用次数: 0

摘要

婴幼儿血管瘤(IH)是婴幼儿时期最常见的良性血管肿瘤,其特点是血管发育异常。它是最常见的血管肿瘤,其相关机制和治疗方法仍是一个难题。目前已通过转录组分析确定了与IH相关的生物标志物,并可用于预测临床结果。本研究旨在确定IH治疗的关键靶基因,并探讨它们在IH病理生理学中可能发挥的作用。基因记录来自基因表达总库数据库。利用综合加权基因共表达网络检查,确定基因集群。进行单样本基因组富集分析以衡量免疫浸润。通过随机森林和最小绝对选择及收缩操作器分析确定了重要基因。最终,确定了一组与该疾病相关的五个关键基因(NETO2、IDO1、KDR、MEG3 和 TMSB15A)。根据枢纽基因构建了预测 IH 诊断的提名图。校准曲线显示,预测结果与模型中的关键基因具有临床意义的结论之间存在有效的一致性。Neuropilin and Tolloid-like 2(NETO2)与肿瘤的发展密切相关。NETO2表达水平在血管瘤衍生内皮细胞(HemECs)中的作用价值增加。沉默 NETO2 后,癌细胞的生长和迁移明显受到抑制。这项研究揭示了NETO2在IH发展过程中的关键作用,提示靶向NETO2可能有效改善IH的治疗效果。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Identifying Potential Diagnostic and Therapeutic Targets for Infantile Hemangioma Using WGCNA and Machine Learning Algorithms

Identifying Potential Diagnostic and Therapeutic Targets for Infantile Hemangioma Using WGCNA and Machine Learning Algorithms

Infantile hemangioma (IH) is the most common benign vascular tumor during infancy and childhood and is characterized by abnormal vascular development. It is the most common vascular tumor and its related mechanisms and treatments remain a problem. IH-related biomarkers have been identified using transcriptome analysis and can be used to predict clinical outcomes. This study aimed to identify the key target genes for IH treatment and explore their possible roles in the IH pathophysiology. Gene records were acquired from the Gene Expression Omnibus database. Utilizing integrated weighted gene co-expression network examination, gene clusters were determined. Single-sample gene set enrichment analysis was performed to gauge immune infiltration. Essential genes were identified via Random Forest and Least Absolute Selection and Shrinkage Operator analyses. Ultimately, a set of five pivotal genes associated with the ailment was identified (NETO2, IDO1, KDR, MEG3, and TMSB15A). A nomogram for predicting IH diagnosis was constructed based on hub genes. The calibration curve showed valid agreement between the prediction and conclusion that the key genes in the model were clinically significant. Neuropilin and Tolloid-like 2 (NETO2) are closely associated with tumor development. The role value of NETO2 expression levels increased in hemangioma-derived endothelial cells (HemECs). After silencing NETO2, the growth and migration of cancer cells were significantly restrained. This study revealed the critical role of NETO2 in IH development, suggesting that targeting NETO2 may be effective in improving the therapeutic outcome of IH.

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来源期刊
Biochemical Genetics
Biochemical Genetics 生物-生化与分子生物学
CiteScore
3.90
自引率
0.00%
发文量
133
审稿时长
4.8 months
期刊介绍: Biochemical Genetics welcomes original manuscripts that address and test clear scientific hypotheses, are directed to a broad scientific audience, and clearly contribute to the advancement of the field through the use of sound sampling or experimental design, reliable analytical methodologies and robust statistical analyses. Although studies focusing on particular regions and target organisms are welcome, it is not the journal’s goal to publish essentially descriptive studies that provide results with narrow applicability, or are based on very small samples or pseudoreplication. Rather, Biochemical Genetics welcomes review articles that go beyond summarizing previous publications and create added value through the systematic analysis and critique of the current state of knowledge or by conducting meta-analyses. Methodological articles are also within the scope of Biological Genetics, particularly when new laboratory techniques or computational approaches are fully described and thoroughly compared with the existing benchmark methods. Biochemical Genetics welcomes articles on the following topics: Genomics; Proteomics; Population genetics; Phylogenetics; Metagenomics; Microbial genetics; Genetics and evolution of wild and cultivated plants; Animal genetics and evolution; Human genetics and evolution; Genetic disorders; Genetic markers of diseases; Gene technology and therapy; Experimental and analytical methods; Statistical and computational methods.
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