利用机器学习快速感知热应力的液晶生物材料平台

IF 3.5 Q2 CHEMISTRY, ANALYTICAL
Prateek Verma, Elizabeth Adeogun, Elizabeth S. Greene, Sami Dridi, Ukash Nakarmi and Karthik Nayani
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引用次数: 0

摘要

新型生物材料通过快速读数弥补了疾病/压力的分子/蛋白质信号耦合方面的知识差距,是社会的迫切需要。其中一种情况是身体产热和散热不平衡,导致生物体产生热应激。除了动物健康受损外,热应激还不利于家禽业,因为家禽需要快速生长和高产,从而导致新陈代谢活动增加,体热产生增加。当受到应激时,细胞会过度表达热休克蛋白(如 HSP70,一种公认的细胞内应激指标),并可能改变其机械特性。液晶(LC,具有定向有序性的流体)是一种简便的感应器,因为它们能轻易地将化学信号转导为易于观察的光学响应。在这项工作中,我们引入了一种混合桥接液晶细胞生物材料,通过使用卷积神经网络(CNN),将 HSP70 表达的差异与响应模式的光学变化联系起来。机器学习(ML)模型是在数百张有热应力和无热应力的鸡红细胞的 LC 反应显微照片上训练出来的。训练后的模型在检测未见显微镜样本中是否存在热应力方面的准确率高达 99%。我们还表明,使用戊二醛交联鸡和人类红细胞以模拟病变细胞是规划、构建、训练和评估 ML 模型的有效策略。总之,我们的努力是为了设计出能快速检测生物体内伴随着细胞机械特性明显变化的疾病的生物材料。我们的目标是使支持 CNN 的液相色谱传感器能够在人类判断过于困难或缓慢的情况下快速报告疾病的存在。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

A liquid crystal-based biomaterial platform for rapid sensing of heat stress using machine learning

A liquid crystal-based biomaterial platform for rapid sensing of heat stress using machine learning

Novel biomaterials that bridge the knowledge gap in coupling molecular/protein signatures of disease/stress with rapid readouts are a critical need of society. One such scenario is an imbalance between bodily heat production and heat dissipation which leads to heat stress in organisms. In addition to diminished animal well-being, heat stress is detrimental to the poultry industry as poultry entails fast growth and high yields, resulting in greater metabolic activity and higher body heat production. When stressed, cells overexpress heat shock proteins (such as HSP70, a well-established intracellular stress indicator) and may undergo changes in their mechanical properties. Liquid crystals (LCs, fluids with orientational order) are facile sensors as they can readily transduce chemical signals to easily observable optical responses. In this work, we introduce a hybrid LC–cell biomaterial within which the difference in the expression of HSP70 is linked to optical changes in the response pattern via the use of convolutional neural networks (CNNs). The machine-learning (ML) models were trained on hundreds of such LC-response micrographs of chicken red blood cells with and without heat stress. The trained models exhibited remarkable accuracy of up to 99% on detecting the presence of heat stress in unseen microscopy samples. We also show that cross-linking chicken and human RBCs using glutaraldehyde in order to simulate a diseased cell was an efficient strategy for planning, building, training, and evaluating ML models. Overall, our efforts build towards designing biomaterials that can rapidly detect disease in organisms that is accompanied by a distinct change in the mechanical properties of cells. We aim to eventuate CNN-enabled LC-sensors that can rapidly report the presence of disease in scenarios where human judgment could be prohibitively difficult or slow.

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