IF 1.7 3区 农林科学 Q2 ENTOMOLOGY
{"title":"Genomics investigation of the potentially invasive firefly Photinus signaticollis Blanchard 1845: Complete mitochondrial genome, multigene phylogenies and obtention of the luciferase and luciferin-regenerating genes","authors":"","doi":"10.1016/j.asd.2024.101384","DOIUrl":null,"url":null,"abstract":"<div><p>A genomic investigation of the potentially invasive firefly <em>Photinus signaticollis</em> Blanchard1845 has been performed and led to the obtention of its complete 16,411 bp long mitochondrial genome. The mitogenome encodes 13 protein-coding genes, 22 tRNA genes and 2 rRNA genes. With other species of the <em>Photinus</em> complex it shares several premature terminations of some protein-coding genes and also an overlap between <em>cox1</em> and <em>tRNA-Tyr</em>. By data-mining, the complete luciferase and luciferin-regenerating genes were also identified from the contigs file and compared with existing data, in addition to <em>WG</em> and CAD, two genes used in pioneering phylogenetic studies on fireflies. Three maximum likelihood phylogenies were derived from all these data. The multigene phylogeny based on all mitochondrial protein-coding genes strongly associates <em>P. signaticollis</em> with <em>Photinus pyralis</em> Linnaeus, 1758 and the lantern-less daily “winter firefly”, <em>Photinus corruscus</em> Linnaeus, 1767. A second phylogeny based on concatenated sequences of the <em>cox1</em>, <em>WG</em> and <em>CAD</em> genes positions <em>P. signaticollis</em> as a sister clade to a large cluster of species containing the 7 sub-groups previously evidenced among the North American species of the <em>Photinus</em> complex. A third phylogeny based on the amino-acid sequence of the luciferase protein associates <em>P. signaticollis</em> to <em>Photinus scintillans.</em> The analysis presented here will most certainly help to come to a better understanding of the very complex inter-relationships in the very large <em>Photinus</em> genus.</p></div>","PeriodicalId":55461,"journal":{"name":"Arthropod Structure & Development","volume":null,"pages":null},"PeriodicalIF":1.7000,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Arthropod Structure & Development","FirstCategoryId":"97","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1467803924000549","RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"ENTOMOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

对具有潜在入侵性的萤火虫 Photinus signaticollis Blanchard1845 进行了基因组研究,并获得了其完整的长达 16,411 bp 的线粒体基因组。有丝分裂基因组编码 13 个蛋白质编码基因、22 个 tRNA 基因和 2 个 rRNA 基因。与 Photinus 复合体的其他物种一样,它的一些蛋白质编码基因也有一些过早终止,而且 cox1 和 tRNA-Tyr 之间也有重叠。通过数据挖掘,还从等位基因文件中确定了完整的荧光素酶基因和荧光素再生基因,并与现有数据进行了比较。从所有这些数据中得出了三个最大似然系统发生。基于所有线粒体蛋白编码基因的多基因系统发生将 signaticollis 与林奈(Photinus pyralis Linnaeus),1758 年和无灯笼的日常 "冬萤"(Photinus corruscus Linnaeus,1767 年)紧密联系在一起。基于 cox1、WG 和 CAD 基因序列的第二个系统发生将 signaticollis 定位为一个大型物种集群的姊妹支系,该物种集群包含先前在 Photinus 复合体北美物种中发现的 7 个亚群。基于荧光素酶蛋白氨基酸序列的第三个系统发育将符号鳉与闪烁鳉联系在一起。本文的分析无疑将有助于更好地了解庞大的Photinus属中非常复杂的相互关系。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Genomics investigation of the potentially invasive firefly Photinus signaticollis Blanchard 1845: Complete mitochondrial genome, multigene phylogenies and obtention of the luciferase and luciferin-regenerating genes

A genomic investigation of the potentially invasive firefly Photinus signaticollis Blanchard1845 has been performed and led to the obtention of its complete 16,411 bp long mitochondrial genome. The mitogenome encodes 13 protein-coding genes, 22 tRNA genes and 2 rRNA genes. With other species of the Photinus complex it shares several premature terminations of some protein-coding genes and also an overlap between cox1 and tRNA-Tyr. By data-mining, the complete luciferase and luciferin-regenerating genes were also identified from the contigs file and compared with existing data, in addition to WG and CAD, two genes used in pioneering phylogenetic studies on fireflies. Three maximum likelihood phylogenies were derived from all these data. The multigene phylogeny based on all mitochondrial protein-coding genes strongly associates P. signaticollis with Photinus pyralis Linnaeus, 1758 and the lantern-less daily “winter firefly”, Photinus corruscus Linnaeus, 1767. A second phylogeny based on concatenated sequences of the cox1, WG and CAD genes positions P. signaticollis as a sister clade to a large cluster of species containing the 7 sub-groups previously evidenced among the North American species of the Photinus complex. A third phylogeny based on the amino-acid sequence of the luciferase protein associates P. signaticollis to Photinus scintillans. The analysis presented here will most certainly help to come to a better understanding of the very complex inter-relationships in the very large Photinus genus.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
3.50
自引率
10.00%
发文量
54
审稿时长
60 days
期刊介绍: Arthropod Structure & Development is a Journal of Arthropod Structural Biology, Development, and Functional Morphology; it considers manuscripts that deal with micro- and neuroanatomy, development, biomechanics, organogenesis in particular under comparative and evolutionary aspects but not merely taxonomic papers. The aim of the journal is to publish papers in the areas of functional and comparative anatomy and development, with an emphasis on the role of cellular organization in organ function. The journal will also publish papers on organogenisis, embryonic and postembryonic development, and organ or tissue regeneration and repair. Manuscripts dealing with comparative and evolutionary aspects of microanatomy and development are encouraged.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信