{"title":"对具有潜在入侵性的萤火虫 Photinus signaticollis Blanchard 1845 进行基因组学调查:完整的线粒体基因组、多基因系统进化以及荧光素酶和荧光素再生基因的获得","authors":"Marcel Koken , Romain Gastineau","doi":"10.1016/j.asd.2024.101384","DOIUrl":null,"url":null,"abstract":"<div><p>A genomic investigation of the potentially invasive firefly <em>Photinus signaticollis</em> Blanchard1845 has been performed and led to the obtention of its complete 16,411 bp long mitochondrial genome. The mitogenome encodes 13 protein-coding genes, 22 tRNA genes and 2 rRNA genes. With other species of the <em>Photinus</em> complex it shares several premature terminations of some protein-coding genes and also an overlap between <em>cox1</em> and <em>tRNA-Tyr</em>. By data-mining, the complete luciferase and luciferin-regenerating genes were also identified from the contigs file and compared with existing data, in addition to <em>WG</em> and CAD, two genes used in pioneering phylogenetic studies on fireflies. Three maximum likelihood phylogenies were derived from all these data. The multigene phylogeny based on all mitochondrial protein-coding genes strongly associates <em>P. signaticollis</em> with <em>Photinus pyralis</em> Linnaeus, 1758 and the lantern-less daily “winter firefly”, <em>Photinus corruscus</em> Linnaeus, 1767. A second phylogeny based on concatenated sequences of the <em>cox1</em>, <em>WG</em> and <em>CAD</em> genes positions <em>P. signaticollis</em> as a sister clade to a large cluster of species containing the 7 sub-groups previously evidenced among the North American species of the <em>Photinus</em> complex. A third phylogeny based on the amino-acid sequence of the luciferase protein associates <em>P. signaticollis</em> to <em>Photinus scintillans.</em> The analysis presented here will most certainly help to come to a better understanding of the very complex inter-relationships in the very large <em>Photinus</em> genus.</p></div>","PeriodicalId":55461,"journal":{"name":"Arthropod Structure & Development","volume":"82 ","pages":"Article 101384"},"PeriodicalIF":1.7000,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Genomics investigation of the potentially invasive firefly Photinus signaticollis Blanchard 1845: Complete mitochondrial genome, multigene phylogenies and obtention of the luciferase and luciferin-regenerating genes\",\"authors\":\"Marcel Koken , Romain Gastineau\",\"doi\":\"10.1016/j.asd.2024.101384\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>A genomic investigation of the potentially invasive firefly <em>Photinus signaticollis</em> Blanchard1845 has been performed and led to the obtention of its complete 16,411 bp long mitochondrial genome. The mitogenome encodes 13 protein-coding genes, 22 tRNA genes and 2 rRNA genes. With other species of the <em>Photinus</em> complex it shares several premature terminations of some protein-coding genes and also an overlap between <em>cox1</em> and <em>tRNA-Tyr</em>. By data-mining, the complete luciferase and luciferin-regenerating genes were also identified from the contigs file and compared with existing data, in addition to <em>WG</em> and CAD, two genes used in pioneering phylogenetic studies on fireflies. Three maximum likelihood phylogenies were derived from all these data. The multigene phylogeny based on all mitochondrial protein-coding genes strongly associates <em>P. signaticollis</em> with <em>Photinus pyralis</em> Linnaeus, 1758 and the lantern-less daily “winter firefly”, <em>Photinus corruscus</em> Linnaeus, 1767. A second phylogeny based on concatenated sequences of the <em>cox1</em>, <em>WG</em> and <em>CAD</em> genes positions <em>P. signaticollis</em> as a sister clade to a large cluster of species containing the 7 sub-groups previously evidenced among the North American species of the <em>Photinus</em> complex. A third phylogeny based on the amino-acid sequence of the luciferase protein associates <em>P. signaticollis</em> to <em>Photinus scintillans.</em> The analysis presented here will most certainly help to come to a better understanding of the very complex inter-relationships in the very large <em>Photinus</em> genus.</p></div>\",\"PeriodicalId\":55461,\"journal\":{\"name\":\"Arthropod Structure & Development\",\"volume\":\"82 \",\"pages\":\"Article 101384\"},\"PeriodicalIF\":1.7000,\"publicationDate\":\"2024-09-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Arthropod Structure & Development\",\"FirstCategoryId\":\"97\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S1467803924000549\",\"RegionNum\":3,\"RegionCategory\":\"农林科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"ENTOMOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Arthropod Structure & Development","FirstCategoryId":"97","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1467803924000549","RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"ENTOMOLOGY","Score":null,"Total":0}
Genomics investigation of the potentially invasive firefly Photinus signaticollis Blanchard 1845: Complete mitochondrial genome, multigene phylogenies and obtention of the luciferase and luciferin-regenerating genes
A genomic investigation of the potentially invasive firefly Photinus signaticollis Blanchard1845 has been performed and led to the obtention of its complete 16,411 bp long mitochondrial genome. The mitogenome encodes 13 protein-coding genes, 22 tRNA genes and 2 rRNA genes. With other species of the Photinus complex it shares several premature terminations of some protein-coding genes and also an overlap between cox1 and tRNA-Tyr. By data-mining, the complete luciferase and luciferin-regenerating genes were also identified from the contigs file and compared with existing data, in addition to WG and CAD, two genes used in pioneering phylogenetic studies on fireflies. Three maximum likelihood phylogenies were derived from all these data. The multigene phylogeny based on all mitochondrial protein-coding genes strongly associates P. signaticollis with Photinus pyralis Linnaeus, 1758 and the lantern-less daily “winter firefly”, Photinus corruscus Linnaeus, 1767. A second phylogeny based on concatenated sequences of the cox1, WG and CAD genes positions P. signaticollis as a sister clade to a large cluster of species containing the 7 sub-groups previously evidenced among the North American species of the Photinus complex. A third phylogeny based on the amino-acid sequence of the luciferase protein associates P. signaticollis to Photinus scintillans. The analysis presented here will most certainly help to come to a better understanding of the very complex inter-relationships in the very large Photinus genus.
期刊介绍:
Arthropod Structure & Development is a Journal of Arthropod Structural Biology, Development, and Functional Morphology; it considers manuscripts that deal with micro- and neuroanatomy, development, biomechanics, organogenesis in particular under comparative and evolutionary aspects but not merely taxonomic papers. The aim of the journal is to publish papers in the areas of functional and comparative anatomy and development, with an emphasis on the role of cellular organization in organ function. The journal will also publish papers on organogenisis, embryonic and postembryonic development, and organ or tissue regeneration and repair. Manuscripts dealing with comparative and evolutionary aspects of microanatomy and development are encouraged.