VASARI-auto:胶质瘤磁共振成像的公平、高效和经济功能化

IF 3.4 2区 医学 Q2 NEUROIMAGING
James K. Ruffle , Samia Mohinta , Kelly Pegoretti Baruteau , Rebekah Rajiah , Faith Lee , Sebastian Brandner , Parashkev Nachev , Harpreet Hyare
{"title":"VASARI-auto:胶质瘤磁共振成像的公平、高效和经济功能化","authors":"James K. Ruffle ,&nbsp;Samia Mohinta ,&nbsp;Kelly Pegoretti Baruteau ,&nbsp;Rebekah Rajiah ,&nbsp;Faith Lee ,&nbsp;Sebastian Brandner ,&nbsp;Parashkev Nachev ,&nbsp;Harpreet Hyare","doi":"10.1016/j.nicl.2024.103668","DOIUrl":null,"url":null,"abstract":"<div><p>The VASARI MRI feature set is a quantitative system designed to standardise glioma imaging descriptions. Though effective, deriving VASARI is time-consuming and seldom used clinically. We sought to resolve this problem with software automation and machine learning. Using glioma data from 1172 patients, we developed VASARI-auto, an automated labelling software applied to open-source lesion masks and an openly available tumour segmentation model. Consultant neuroradiologists independently quantified VASARI features in 100 held-out glioblastoma cases. We quantified 1) agreement across neuroradiologists and VASARI-auto, 2) software equity, 3) an economic workforce analysis, and 4) fidelity in predicting survival. Tumour segmentation was compatible with the current state of the art and equally performant regardless of age or sex. A modest inter-rater variability between in-house neuroradiologists was comparable to between neuroradiologists and VASARI-auto, with far higher agreement between VASARI-auto methods. The time for neuroradiologists to derive VASARI was substantially higher than VASARI-auto (mean time per case 317 vs. 3 s). A UK hospital workforce analysis forecast that three years of VASARI featurisation would demand 29,777 consultant neuroradiologist workforce hours and &gt;£1.5 ($1.9) million, reducible to 332 hours of computing time (and £146 of power) with VASARI-auto. The best-performing survival model utilised VASARI-auto features instead of those derived by neuroradiologists. VASARI-auto is a highly efficient and equitable automated labelling system, a favourable economic profile if used as a decision support tool, and non-inferior survival prediction. Future work should iterate upon and integrate such tools to enhance patient care.</p></div>","PeriodicalId":54359,"journal":{"name":"Neuroimage-Clinical","volume":null,"pages":null},"PeriodicalIF":3.4000,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2213158224001074/pdfft?md5=b46614e6b4c1744e0fca04eac0c7273b&pid=1-s2.0-S2213158224001074-main.pdf","citationCount":"0","resultStr":"{\"title\":\"VASARI-auto: Equitable, efficient, and economical featurisation of glioma MRI\",\"authors\":\"James K. Ruffle ,&nbsp;Samia Mohinta ,&nbsp;Kelly Pegoretti Baruteau ,&nbsp;Rebekah Rajiah ,&nbsp;Faith Lee ,&nbsp;Sebastian Brandner ,&nbsp;Parashkev Nachev ,&nbsp;Harpreet Hyare\",\"doi\":\"10.1016/j.nicl.2024.103668\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>The VASARI MRI feature set is a quantitative system designed to standardise glioma imaging descriptions. Though effective, deriving VASARI is time-consuming and seldom used clinically. We sought to resolve this problem with software automation and machine learning. Using glioma data from 1172 patients, we developed VASARI-auto, an automated labelling software applied to open-source lesion masks and an openly available tumour segmentation model. Consultant neuroradiologists independently quantified VASARI features in 100 held-out glioblastoma cases. We quantified 1) agreement across neuroradiologists and VASARI-auto, 2) software equity, 3) an economic workforce analysis, and 4) fidelity in predicting survival. Tumour segmentation was compatible with the current state of the art and equally performant regardless of age or sex. A modest inter-rater variability between in-house neuroradiologists was comparable to between neuroradiologists and VASARI-auto, with far higher agreement between VASARI-auto methods. The time for neuroradiologists to derive VASARI was substantially higher than VASARI-auto (mean time per case 317 vs. 3 s). A UK hospital workforce analysis forecast that three years of VASARI featurisation would demand 29,777 consultant neuroradiologist workforce hours and &gt;£1.5 ($1.9) million, reducible to 332 hours of computing time (and £146 of power) with VASARI-auto. The best-performing survival model utilised VASARI-auto features instead of those derived by neuroradiologists. VASARI-auto is a highly efficient and equitable automated labelling system, a favourable economic profile if used as a decision support tool, and non-inferior survival prediction. Future work should iterate upon and integrate such tools to enhance patient care.</p></div>\",\"PeriodicalId\":54359,\"journal\":{\"name\":\"Neuroimage-Clinical\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":3.4000,\"publicationDate\":\"2024-01-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.sciencedirect.com/science/article/pii/S2213158224001074/pdfft?md5=b46614e6b4c1744e0fca04eac0c7273b&pid=1-s2.0-S2213158224001074-main.pdf\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Neuroimage-Clinical\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2213158224001074\",\"RegionNum\":2,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"NEUROIMAGING\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Neuroimage-Clinical","FirstCategoryId":"3","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2213158224001074","RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"NEUROIMAGING","Score":null,"Total":0}
引用次数: 0

摘要

VASARI MRI 特征集是一个定量系统,旨在使胶质瘤成像描述标准化。VASARI 的生成虽然有效,但却非常耗时,而且很少用于临床。我们试图通过软件自动化和机器学习来解决这一问题。我们利用 1172 名患者的胶质瘤数据开发了 VASARI-auto,这是一款自动标注软件,适用于开源病灶掩膜和公开可用的肿瘤分割模型。神经放射顾问独立量化了 100 例保留的胶质母细胞瘤病例的 VASARI 特征。我们对以下几个方面进行了量化:1)神经放射学专家与 VASARI-auto 之间的一致性;2)软件的公平性;3)经济劳动力分析;4)预测存活率的准确性。肿瘤分割符合当前的技术水平,而且无论年龄或性别都具有相同的性能。内部神经放射科医生之间的评分者间差异不大,与神经放射科医生和 VASARI-auto 之间的差异相当,而 VASARI-auto 方法之间的一致性要高得多。神经放射医师推导 VASARI 所需的时间大大高于 VASARI-自动方法(每个病例的平均时间为 317 对 3 秒)。英国一家医院的劳动力分析预测,VASARI功能化三年将需要神经放射科顾问29777个工时和150万英镑(190万美元),而VASARI-auto可减少到332个工时(146英镑)。表现最好的生存模型利用了 VASARI-auto 的特征,而不是神经放射科医生得出的特征。VASARI-auto是一种高效、公平的自动标记系统,如果作为决策支持工具使用,则具有良好的经济效益,而且生存预测效果并不差。未来的工作应不断改进和整合此类工具,以加强对患者的护理。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

VASARI-auto: Equitable, efficient, and economical featurisation of glioma MRI

VASARI-auto: Equitable, efficient, and economical featurisation of glioma MRI

The VASARI MRI feature set is a quantitative system designed to standardise glioma imaging descriptions. Though effective, deriving VASARI is time-consuming and seldom used clinically. We sought to resolve this problem with software automation and machine learning. Using glioma data from 1172 patients, we developed VASARI-auto, an automated labelling software applied to open-source lesion masks and an openly available tumour segmentation model. Consultant neuroradiologists independently quantified VASARI features in 100 held-out glioblastoma cases. We quantified 1) agreement across neuroradiologists and VASARI-auto, 2) software equity, 3) an economic workforce analysis, and 4) fidelity in predicting survival. Tumour segmentation was compatible with the current state of the art and equally performant regardless of age or sex. A modest inter-rater variability between in-house neuroradiologists was comparable to between neuroradiologists and VASARI-auto, with far higher agreement between VASARI-auto methods. The time for neuroradiologists to derive VASARI was substantially higher than VASARI-auto (mean time per case 317 vs. 3 s). A UK hospital workforce analysis forecast that three years of VASARI featurisation would demand 29,777 consultant neuroradiologist workforce hours and >£1.5 ($1.9) million, reducible to 332 hours of computing time (and £146 of power) with VASARI-auto. The best-performing survival model utilised VASARI-auto features instead of those derived by neuroradiologists. VASARI-auto is a highly efficient and equitable automated labelling system, a favourable economic profile if used as a decision support tool, and non-inferior survival prediction. Future work should iterate upon and integrate such tools to enhance patient care.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Neuroimage-Clinical
Neuroimage-Clinical NEUROIMAGING-
CiteScore
7.50
自引率
4.80%
发文量
368
审稿时长
52 days
期刊介绍: NeuroImage: Clinical, a journal of diseases, disorders and syndromes involving the Nervous System, provides a vehicle for communicating important advances in the study of abnormal structure-function relationships of the human nervous system based on imaging. The focus of NeuroImage: Clinical is on defining changes to the brain associated with primary neurologic and psychiatric diseases and disorders of the nervous system as well as behavioral syndromes and developmental conditions. The main criterion for judging papers is the extent of scientific advancement in the understanding of the pathophysiologic mechanisms of diseases and disorders, in identification of functional models that link clinical signs and symptoms with brain function and in the creation of image based tools applicable to a broad range of clinical needs including diagnosis, monitoring and tracking of illness, predicting therapeutic response and development of new treatments. Papers dealing with structure and function in animal models will also be considered if they reveal mechanisms that can be readily translated to human conditions.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信