评估生物能模型中个体间的变异性:机遇、挑战和潜在应用

IF 2.6 3区 环境科学与生态学 Q2 ECOLOGY
Miquel Palmer , Irene Moro-Martínez , Joaquim Tomàs-Ferrer , Amalia Grau , María Dolores López-Belluga , Marine Herlin , Orestis Stavrakidis-Zachou , Andrea Campos-Candela
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引用次数: 0

摘要

种群动态受个体间变异性的影响。动态能量预算(DEB)理论是评估这种变异性的一个有吸引力的框架,但很少在个体水平上估算动态能量预算参数。贝叶斯分层模型有望推断出动态能量预算参数的个体变异性,但由于需要求解微分方程,计算方面的挑战限制了其使用。Stan 作为一种用于拟合动态模型的通用统计工具应运而生。本文介绍了一种利用贝叶斯参数推断和分层建模估算个体特异性 DEB 参数的分析策略。本文成功估算了 69 条金头鳊(Sparus aurata)的两个生物相关 DEB 参数,每条金头鳊的长度和湿重测量值多达 11 个。这两个 DEB 参数的估计个体间变异性很好地解释了在个体间和个体内观察到的长度和重量模式。此外,数据模拟实验强调了我们的方法的潜力和局限性,表明改进数据收集可以提高精确度,增加个体水平上可估算的 DEB 参数的数量。这种策略能更好地体现 DEB 参数的个体间变异性,最终可能会在将 DEB 纳入种群模型后改善种群动态预测。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Assessing between-individual variability in bioenergetics modelling: Opportunities, challenges, and potential applications

Assessing between-individual variability in bioenergetics modelling: Opportunities, challenges, and potential applications

Population dynamics is influenced by between-individual variability. Dynamic Energy Budget (DEB) theory is an appealing framework for assessing such a variability, yet DEB parameters have rarely been estimated at the individual level. Bayesian hierarchical models show promise for inferring individual variability in DEB parameters, thought computational challenges have limited their use due to the need to solve differential equations. Timely, Stan has emerged as a general-purpose statistical tool for fitting dynamic models. This paper introduces an analytical strategy using Bayesian parametric inference and hierarchical modelling to estimate individual-specific DEB parameters. Two biologically relevant DEB parameters were successfully estimated for 69 Gilt-head breams (Sparus aurata) with up to 11 measures of length and wet weight each. The estimated between-individual variability in these two DEB parameters explained well the observed patterns in length and weight at between- and within-individual levels. Moreover, data-simulation experiments highlighted the potential and limitations of our approach, suggesting that improved data collection could enable to increase precision and the number of DEB parameters that can be estimated at the individual level. This strategy can better represent between-individual variability in DEB parameters, which ultimately may improve forecasting of population dynamics after integrating DEB into population models.

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来源期刊
Ecological Modelling
Ecological Modelling 环境科学-生态学
CiteScore
5.60
自引率
6.50%
发文量
259
审稿时长
69 days
期刊介绍: The journal is concerned with the use of mathematical models and systems analysis for the description of ecological processes and for the sustainable management of resources. Human activity and well-being are dependent on and integrated with the functioning of ecosystems and the services they provide. We aim to understand these basic ecosystem functions using mathematical and conceptual modelling, systems analysis, thermodynamics, computer simulations, and ecological theory. This leads to a preference for process-based models embedded in theory with explicit causative agents as opposed to strictly statistical or correlative descriptions. These modelling methods can be applied to a wide spectrum of issues ranging from basic ecology to human ecology to socio-ecological systems. The journal welcomes research articles, short communications, review articles, letters to the editor, book reviews, and other communications. The journal also supports the activities of the [International Society of Ecological Modelling (ISEM)](http://www.isemna.org/).
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