用代谢组学方法确定与维持性血液透析患者死亡率相关的代谢物

IF 8.3 2区 材料科学 Q1 MATERIALS SCIENCE, MULTIDISCIPLINARY
Solaf Al Awadhi , Leslie Myint , Eliseo Guallar , Clary B. Clish , Kendra E. Wulczyn , Sahir Kalim , Ravi Thadhani , Dorry L. Segev , Mara McAdams DeMarco , Sharon M. Moe , Ranjani N. Moorthi , Thomas H. Hostetter , Jonathan Himmelfarb , Timothy W. Meyer , Neil R. Powe , Marcello Tonelli , Eugene P. Rhee , Tariq Shafi
{"title":"用代谢组学方法确定与维持性血液透析患者死亡率相关的代谢物","authors":"Solaf Al Awadhi ,&nbsp;Leslie Myint ,&nbsp;Eliseo Guallar ,&nbsp;Clary B. Clish ,&nbsp;Kendra E. Wulczyn ,&nbsp;Sahir Kalim ,&nbsp;Ravi Thadhani ,&nbsp;Dorry L. Segev ,&nbsp;Mara McAdams DeMarco ,&nbsp;Sharon M. Moe ,&nbsp;Ranjani N. Moorthi ,&nbsp;Thomas H. Hostetter ,&nbsp;Jonathan Himmelfarb ,&nbsp;Timothy W. Meyer ,&nbsp;Neil R. Powe ,&nbsp;Marcello Tonelli ,&nbsp;Eugene P. Rhee ,&nbsp;Tariq Shafi","doi":"10.1016/j.ekir.2024.06.039","DOIUrl":null,"url":null,"abstract":"<div><h3>Introduction</h3><p>Uremic toxins contributing to increased risk of death remain largely unknown. We used untargeted metabolomics to identify plasma metabolites associated with mortality in patients receiving maintenance hemodialysis.</p></div><div><h3>Methods</h3><p>We measured metabolites in serum samples from 522 Longitudinal US/Canada Incident Dialysis (LUCID) study participants. We assessed the association between metabolites and 1-year mortality, adjusting for age, sex, race, cardiovascular disease, diabetes, body mass index, serum albumin, Kt/Vurea, dialysis duration, and country. We modeled these associations using limma, a metabolite-wise linear model with empirical Bayesian inference, and 2 machine learning (ML) models: Least absolute shrinkage and selection operator (LASSO) and random forest (RF). We accounted for multiple testing using a false discovery rate (pFDR) adjustment. We defined significant mortality-metabolite associations as pFDR &lt; 0.1 in the limma model and metabolites of at least medium importance in both ML models.</p></div><div><h3>Results</h3><p>The mean age of the participants was 64 years, the mean dialysis duration was 35 days, and there were 44 deaths (8.4%) during a 1-year follow-up period. Two metabolites were significantly associated with 1-year mortality. Quinolinate levels (a kynurenine pathway metabolite) were 1.72-fold higher in patients who died within year 1 compared with those who did not (pFDR, 0.009), wheras mesaconate levels (an emerging immunometabolite) were 1.57-fold higher (pFDR, 0.002). An additional 42 metabolites had high importance as <em>per</em> LASSO, 46 <em>per</em> RF, and 9 <em>per</em> both ML models but were not significant <em>per</em> limma.</p></div><div><h3>Conclusion</h3><p>Quinolinate and mesaconate were significantly associated with a 1-year risk of death in incident patients receiving maintenance hemodialysis. External validation of our findings is needed.</p></div>","PeriodicalId":5,"journal":{"name":"ACS Applied Materials & Interfaces","volume":null,"pages":null},"PeriodicalIF":8.3000,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2468024924018163/pdfft?md5=c8f6e6b2cc7773a5e282a67d987f57a0&pid=1-s2.0-S2468024924018163-main.pdf","citationCount":"0","resultStr":"{\"title\":\"A Metabolomics Approach to Identify Metabolites Associated With Mortality in Patients Receiving Maintenance Hemodialysis\",\"authors\":\"Solaf Al Awadhi ,&nbsp;Leslie Myint ,&nbsp;Eliseo Guallar ,&nbsp;Clary B. Clish ,&nbsp;Kendra E. Wulczyn ,&nbsp;Sahir Kalim ,&nbsp;Ravi Thadhani ,&nbsp;Dorry L. Segev ,&nbsp;Mara McAdams DeMarco ,&nbsp;Sharon M. Moe ,&nbsp;Ranjani N. Moorthi ,&nbsp;Thomas H. Hostetter ,&nbsp;Jonathan Himmelfarb ,&nbsp;Timothy W. Meyer ,&nbsp;Neil R. Powe ,&nbsp;Marcello Tonelli ,&nbsp;Eugene P. Rhee ,&nbsp;Tariq Shafi\",\"doi\":\"10.1016/j.ekir.2024.06.039\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><h3>Introduction</h3><p>Uremic toxins contributing to increased risk of death remain largely unknown. We used untargeted metabolomics to identify plasma metabolites associated with mortality in patients receiving maintenance hemodialysis.</p></div><div><h3>Methods</h3><p>We measured metabolites in serum samples from 522 Longitudinal US/Canada Incident Dialysis (LUCID) study participants. We assessed the association between metabolites and 1-year mortality, adjusting for age, sex, race, cardiovascular disease, diabetes, body mass index, serum albumin, Kt/Vurea, dialysis duration, and country. We modeled these associations using limma, a metabolite-wise linear model with empirical Bayesian inference, and 2 machine learning (ML) models: Least absolute shrinkage and selection operator (LASSO) and random forest (RF). We accounted for multiple testing using a false discovery rate (pFDR) adjustment. We defined significant mortality-metabolite associations as pFDR &lt; 0.1 in the limma model and metabolites of at least medium importance in both ML models.</p></div><div><h3>Results</h3><p>The mean age of the participants was 64 years, the mean dialysis duration was 35 days, and there were 44 deaths (8.4%) during a 1-year follow-up period. Two metabolites were significantly associated with 1-year mortality. Quinolinate levels (a kynurenine pathway metabolite) were 1.72-fold higher in patients who died within year 1 compared with those who did not (pFDR, 0.009), wheras mesaconate levels (an emerging immunometabolite) were 1.57-fold higher (pFDR, 0.002). An additional 42 metabolites had high importance as <em>per</em> LASSO, 46 <em>per</em> RF, and 9 <em>per</em> both ML models but were not significant <em>per</em> limma.</p></div><div><h3>Conclusion</h3><p>Quinolinate and mesaconate were significantly associated with a 1-year risk of death in incident patients receiving maintenance hemodialysis. External validation of our findings is needed.</p></div>\",\"PeriodicalId\":5,\"journal\":{\"name\":\"ACS Applied Materials & Interfaces\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":8.3000,\"publicationDate\":\"2024-09-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.sciencedirect.com/science/article/pii/S2468024924018163/pdfft?md5=c8f6e6b2cc7773a5e282a67d987f57a0&pid=1-s2.0-S2468024924018163-main.pdf\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"ACS Applied Materials & Interfaces\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2468024924018163\",\"RegionNum\":2,\"RegionCategory\":\"材料科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"MATERIALS SCIENCE, MULTIDISCIPLINARY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"ACS Applied Materials & Interfaces","FirstCategoryId":"3","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2468024924018163","RegionNum":2,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"MATERIALS SCIENCE, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 0

摘要

引言导致死亡风险增加的尿毒症毒素在很大程度上仍不为人所知。我们利用非靶向代谢组学来确定与接受维持性血液透析患者死亡率相关的血浆代谢物。我们评估了代谢物与 1 年死亡率之间的关系,并对年龄、性别、种族、心血管疾病、糖尿病、体重指数、血清白蛋白、Kt/Vurea、透析持续时间和国家进行了调整。我们使用具有贝叶斯经验推断的代谢物线性模型 limma 和两个机器学习 (ML) 模型对这些关联进行了建模:最小绝对收缩和选择算子 (LASSO) 和随机森林 (RF)。我们使用错误发现率(pFDR)调整来考虑多重检验。结果参与者的平均年龄为 64 岁,平均透析时间为 35 天,在为期 1 年的随访期间有 44 人死亡(8.4%)。有两种代谢物与 1 年的死亡率明显相关。与未死亡的患者相比,1年内死亡的患者体内喹啉酸盐水平(一种犬尿氨酸途径代谢物)高出1.72倍(pFDR,0.009),而mesaconate水平(一种新出现的免疫代谢物)高出1.57倍(pFDR,0.002)。结论喹啉酸盐和间乌头酸盐与接受维持性血液透析患者的1年死亡风险显著相关。我们的研究结果需要外部验证。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

A Metabolomics Approach to Identify Metabolites Associated With Mortality in Patients Receiving Maintenance Hemodialysis

A Metabolomics Approach to Identify Metabolites Associated With Mortality in Patients Receiving Maintenance Hemodialysis

Introduction

Uremic toxins contributing to increased risk of death remain largely unknown. We used untargeted metabolomics to identify plasma metabolites associated with mortality in patients receiving maintenance hemodialysis.

Methods

We measured metabolites in serum samples from 522 Longitudinal US/Canada Incident Dialysis (LUCID) study participants. We assessed the association between metabolites and 1-year mortality, adjusting for age, sex, race, cardiovascular disease, diabetes, body mass index, serum albumin, Kt/Vurea, dialysis duration, and country. We modeled these associations using limma, a metabolite-wise linear model with empirical Bayesian inference, and 2 machine learning (ML) models: Least absolute shrinkage and selection operator (LASSO) and random forest (RF). We accounted for multiple testing using a false discovery rate (pFDR) adjustment. We defined significant mortality-metabolite associations as pFDR < 0.1 in the limma model and metabolites of at least medium importance in both ML models.

Results

The mean age of the participants was 64 years, the mean dialysis duration was 35 days, and there were 44 deaths (8.4%) during a 1-year follow-up period. Two metabolites were significantly associated with 1-year mortality. Quinolinate levels (a kynurenine pathway metabolite) were 1.72-fold higher in patients who died within year 1 compared with those who did not (pFDR, 0.009), wheras mesaconate levels (an emerging immunometabolite) were 1.57-fold higher (pFDR, 0.002). An additional 42 metabolites had high importance as per LASSO, 46 per RF, and 9 per both ML models but were not significant per limma.

Conclusion

Quinolinate and mesaconate were significantly associated with a 1-year risk of death in incident patients receiving maintenance hemodialysis. External validation of our findings is needed.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
ACS Applied Materials & Interfaces
ACS Applied Materials & Interfaces 工程技术-材料科学:综合
CiteScore
16.00
自引率
6.30%
发文量
4978
审稿时长
1.8 months
期刊介绍: ACS Applied Materials & Interfaces is a leading interdisciplinary journal that brings together chemists, engineers, physicists, and biologists to explore the development and utilization of newly-discovered materials and interfacial processes for specific applications. Our journal has experienced remarkable growth since its establishment in 2009, both in terms of the number of articles published and the impact of the research showcased. We are proud to foster a truly global community, with the majority of published articles originating from outside the United States, reflecting the rapid growth of applied research worldwide.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信