Solaf Al Awadhi , Leslie Myint , Eliseo Guallar , Clary B. Clish , Kendra E. Wulczyn , Sahir Kalim , Ravi Thadhani , Dorry L. Segev , Mara McAdams DeMarco , Sharon M. Moe , Ranjani N. Moorthi , Thomas H. Hostetter , Jonathan Himmelfarb , Timothy W. Meyer , Neil R. Powe , Marcello Tonelli , Eugene P. Rhee , Tariq Shafi
{"title":"用代谢组学方法确定与维持性血液透析患者死亡率相关的代谢物","authors":"Solaf Al Awadhi , Leslie Myint , Eliseo Guallar , Clary B. Clish , Kendra E. Wulczyn , Sahir Kalim , Ravi Thadhani , Dorry L. Segev , Mara McAdams DeMarco , Sharon M. Moe , Ranjani N. Moorthi , Thomas H. Hostetter , Jonathan Himmelfarb , Timothy W. Meyer , Neil R. Powe , Marcello Tonelli , Eugene P. Rhee , Tariq Shafi","doi":"10.1016/j.ekir.2024.06.039","DOIUrl":null,"url":null,"abstract":"<div><h3>Introduction</h3><p>Uremic toxins contributing to increased risk of death remain largely unknown. We used untargeted metabolomics to identify plasma metabolites associated with mortality in patients receiving maintenance hemodialysis.</p></div><div><h3>Methods</h3><p>We measured metabolites in serum samples from 522 Longitudinal US/Canada Incident Dialysis (LUCID) study participants. We assessed the association between metabolites and 1-year mortality, adjusting for age, sex, race, cardiovascular disease, diabetes, body mass index, serum albumin, Kt/Vurea, dialysis duration, and country. We modeled these associations using limma, a metabolite-wise linear model with empirical Bayesian inference, and 2 machine learning (ML) models: Least absolute shrinkage and selection operator (LASSO) and random forest (RF). We accounted for multiple testing using a false discovery rate (pFDR) adjustment. We defined significant mortality-metabolite associations as pFDR < 0.1 in the limma model and metabolites of at least medium importance in both ML models.</p></div><div><h3>Results</h3><p>The mean age of the participants was 64 years, the mean dialysis duration was 35 days, and there were 44 deaths (8.4%) during a 1-year follow-up period. Two metabolites were significantly associated with 1-year mortality. Quinolinate levels (a kynurenine pathway metabolite) were 1.72-fold higher in patients who died within year 1 compared with those who did not (pFDR, 0.009), wheras mesaconate levels (an emerging immunometabolite) were 1.57-fold higher (pFDR, 0.002). An additional 42 metabolites had high importance as <em>per</em> LASSO, 46 <em>per</em> RF, and 9 <em>per</em> both ML models but were not significant <em>per</em> limma.</p></div><div><h3>Conclusion</h3><p>Quinolinate and mesaconate were significantly associated with a 1-year risk of death in incident patients receiving maintenance hemodialysis. External validation of our findings is needed.</p></div>","PeriodicalId":5,"journal":{"name":"ACS Applied Materials & Interfaces","volume":null,"pages":null},"PeriodicalIF":8.3000,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2468024924018163/pdfft?md5=c8f6e6b2cc7773a5e282a67d987f57a0&pid=1-s2.0-S2468024924018163-main.pdf","citationCount":"0","resultStr":"{\"title\":\"A Metabolomics Approach to Identify Metabolites Associated With Mortality in Patients Receiving Maintenance Hemodialysis\",\"authors\":\"Solaf Al Awadhi , Leslie Myint , Eliseo Guallar , Clary B. Clish , Kendra E. Wulczyn , Sahir Kalim , Ravi Thadhani , Dorry L. Segev , Mara McAdams DeMarco , Sharon M. Moe , Ranjani N. Moorthi , Thomas H. Hostetter , Jonathan Himmelfarb , Timothy W. Meyer , Neil R. Powe , Marcello Tonelli , Eugene P. Rhee , Tariq Shafi\",\"doi\":\"10.1016/j.ekir.2024.06.039\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><h3>Introduction</h3><p>Uremic toxins contributing to increased risk of death remain largely unknown. We used untargeted metabolomics to identify plasma metabolites associated with mortality in patients receiving maintenance hemodialysis.</p></div><div><h3>Methods</h3><p>We measured metabolites in serum samples from 522 Longitudinal US/Canada Incident Dialysis (LUCID) study participants. We assessed the association between metabolites and 1-year mortality, adjusting for age, sex, race, cardiovascular disease, diabetes, body mass index, serum albumin, Kt/Vurea, dialysis duration, and country. We modeled these associations using limma, a metabolite-wise linear model with empirical Bayesian inference, and 2 machine learning (ML) models: Least absolute shrinkage and selection operator (LASSO) and random forest (RF). We accounted for multiple testing using a false discovery rate (pFDR) adjustment. We defined significant mortality-metabolite associations as pFDR < 0.1 in the limma model and metabolites of at least medium importance in both ML models.</p></div><div><h3>Results</h3><p>The mean age of the participants was 64 years, the mean dialysis duration was 35 days, and there were 44 deaths (8.4%) during a 1-year follow-up period. Two metabolites were significantly associated with 1-year mortality. Quinolinate levels (a kynurenine pathway metabolite) were 1.72-fold higher in patients who died within year 1 compared with those who did not (pFDR, 0.009), wheras mesaconate levels (an emerging immunometabolite) were 1.57-fold higher (pFDR, 0.002). 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A Metabolomics Approach to Identify Metabolites Associated With Mortality in Patients Receiving Maintenance Hemodialysis
Introduction
Uremic toxins contributing to increased risk of death remain largely unknown. We used untargeted metabolomics to identify plasma metabolites associated with mortality in patients receiving maintenance hemodialysis.
Methods
We measured metabolites in serum samples from 522 Longitudinal US/Canada Incident Dialysis (LUCID) study participants. We assessed the association between metabolites and 1-year mortality, adjusting for age, sex, race, cardiovascular disease, diabetes, body mass index, serum albumin, Kt/Vurea, dialysis duration, and country. We modeled these associations using limma, a metabolite-wise linear model with empirical Bayesian inference, and 2 machine learning (ML) models: Least absolute shrinkage and selection operator (LASSO) and random forest (RF). We accounted for multiple testing using a false discovery rate (pFDR) adjustment. We defined significant mortality-metabolite associations as pFDR < 0.1 in the limma model and metabolites of at least medium importance in both ML models.
Results
The mean age of the participants was 64 years, the mean dialysis duration was 35 days, and there were 44 deaths (8.4%) during a 1-year follow-up period. Two metabolites were significantly associated with 1-year mortality. Quinolinate levels (a kynurenine pathway metabolite) were 1.72-fold higher in patients who died within year 1 compared with those who did not (pFDR, 0.009), wheras mesaconate levels (an emerging immunometabolite) were 1.57-fold higher (pFDR, 0.002). An additional 42 metabolites had high importance as per LASSO, 46 per RF, and 9 per both ML models but were not significant per limma.
Conclusion
Quinolinate and mesaconate were significantly associated with a 1-year risk of death in incident patients receiving maintenance hemodialysis. External validation of our findings is needed.
期刊介绍:
ACS Applied Materials & Interfaces is a leading interdisciplinary journal that brings together chemists, engineers, physicists, and biologists to explore the development and utilization of newly-discovered materials and interfacial processes for specific applications. Our journal has experienced remarkable growth since its establishment in 2009, both in terms of the number of articles published and the impact of the research showcased. We are proud to foster a truly global community, with the majority of published articles originating from outside the United States, reflecting the rapid growth of applied research worldwide.