Jie Huang, Shuai Li, Jun Liu, Chun-Yan Lu, Sadia Manzoor, Lei Dong, Wen-Jun Li
{"title":"基于基因组将 Kineococcus aureolus Xu 等人 2017 年重新分类为 Kineococcus terrestris Xu 等人 2017 年的后异型异名。","authors":"Jie Huang, Shuai Li, Jun Liu, Chun-Yan Lu, Sadia Manzoor, Lei Dong, Wen-Jun Li","doi":"10.1099/ijsem.0.006504","DOIUrl":null,"url":null,"abstract":"<p><p>We aimed to elucidate the relationship between <i>Kineococcus terrestris</i> and <i>Kineococcus aureolus</i> through whole-genome-based analysis. The genome-derived 16S rRNA gene sequences of <i>K. terrestris</i> KCTC 39738<sup>T</sup> and <i>K. aureolus</i> KCTC 39739<sup>T</sup> shared a 100% similarity. Phylogenetic trees based on 16S rRNA gene and whole-genome sequences revealed that <i>K. terrestris</i> KCTC 39738<sup>T</sup> and <i>K. aureolus</i> KCTC 39739<sup>T</sup> formed a robust clade, indicating a close relationship between them. Genomic comparison showed that the two strains shared 99.1% average nucleotide identity, 92.0% digital DNA-DNA hybridization and 98.9% average amino acid identity values, all of which exceeded the recommended threshold values for species classification. Most phenotypic characteristics between the two species were almost identical. Based on the above evidence, we propose the reclassification of <i>Kineococcus aureolus</i> Xu <i>et al</i>. 2017 as a later heterotypic synonym of <i>Kineococcus terrestris</i> Xu <i>et al</i>. 2017. Since these two species were proposed in the same article, the principle of priority does not apply. Our proposal is supported by the fact that the nomenclatural authorities first described <i>Kineococcus terrestris</i>.</p>","PeriodicalId":14390,"journal":{"name":"International journal of systematic and evolutionary microbiology","volume":"74 8","pages":""},"PeriodicalIF":2.0000,"publicationDate":"2024-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Genome-based reclassification of <i>Kineococcus aureolus</i> Xu <i>et al</i>. 2017 as a later heterotypic synonym of <i>Kineococcus terrestris</i> Xu <i>et al</i>. 2017.\",\"authors\":\"Jie Huang, Shuai Li, Jun Liu, Chun-Yan Lu, Sadia Manzoor, Lei Dong, Wen-Jun Li\",\"doi\":\"10.1099/ijsem.0.006504\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>We aimed to elucidate the relationship between <i>Kineococcus terrestris</i> and <i>Kineococcus aureolus</i> through whole-genome-based analysis. The genome-derived 16S rRNA gene sequences of <i>K. terrestris</i> KCTC 39738<sup>T</sup> and <i>K. aureolus</i> KCTC 39739<sup>T</sup> shared a 100% similarity. Phylogenetic trees based on 16S rRNA gene and whole-genome sequences revealed that <i>K. terrestris</i> KCTC 39738<sup>T</sup> and <i>K. aureolus</i> KCTC 39739<sup>T</sup> formed a robust clade, indicating a close relationship between them. Genomic comparison showed that the two strains shared 99.1% average nucleotide identity, 92.0% digital DNA-DNA hybridization and 98.9% average amino acid identity values, all of which exceeded the recommended threshold values for species classification. Most phenotypic characteristics between the two species were almost identical. Based on the above evidence, we propose the reclassification of <i>Kineococcus aureolus</i> Xu <i>et al</i>. 2017 as a later heterotypic synonym of <i>Kineococcus terrestris</i> Xu <i>et al</i>. 2017. Since these two species were proposed in the same article, the principle of priority does not apply. Our proposal is supported by the fact that the nomenclatural authorities first described <i>Kineococcus terrestris</i>.</p>\",\"PeriodicalId\":14390,\"journal\":{\"name\":\"International journal of systematic and evolutionary microbiology\",\"volume\":\"74 8\",\"pages\":\"\"},\"PeriodicalIF\":2.0000,\"publicationDate\":\"2024-08-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"International journal of systematic and evolutionary microbiology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1099/ijsem.0.006504\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"International journal of systematic and evolutionary microbiology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1099/ijsem.0.006504","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"MICROBIOLOGY","Score":null,"Total":0}
Genome-based reclassification of Kineococcus aureolus Xu et al. 2017 as a later heterotypic synonym of Kineococcus terrestris Xu et al. 2017.
We aimed to elucidate the relationship between Kineococcus terrestris and Kineococcus aureolus through whole-genome-based analysis. The genome-derived 16S rRNA gene sequences of K. terrestris KCTC 39738T and K. aureolus KCTC 39739T shared a 100% similarity. Phylogenetic trees based on 16S rRNA gene and whole-genome sequences revealed that K. terrestris KCTC 39738T and K. aureolus KCTC 39739T formed a robust clade, indicating a close relationship between them. Genomic comparison showed that the two strains shared 99.1% average nucleotide identity, 92.0% digital DNA-DNA hybridization and 98.9% average amino acid identity values, all of which exceeded the recommended threshold values for species classification. Most phenotypic characteristics between the two species were almost identical. Based on the above evidence, we propose the reclassification of Kineococcus aureolus Xu et al. 2017 as a later heterotypic synonym of Kineococcus terrestris Xu et al. 2017. Since these two species were proposed in the same article, the principle of priority does not apply. Our proposal is supported by the fact that the nomenclatural authorities first described Kineococcus terrestris.
期刊介绍:
Published by the Microbiology Society and owned by the International Committee on Systematics of Prokaryotes (ICSP), a committee of the Bacteriology and Applied Microbiology Division of the International Union of Microbiological Societies, International Journal of Systematic and Evolutionary Microbiology is the leading forum for the publication of novel microbial taxa and the ICSP’s official journal of record for prokaryotic names.
The journal welcomes high-quality research on all aspects of microbial evolution, phylogenetics and systematics, encouraging submissions on all prokaryotes, yeasts, microfungi, protozoa and microalgae across the full breadth of systematics including:
Identification, characterisation and culture preservation
Microbial evolution and biodiversity
Molecular environmental work with strong taxonomic or evolutionary content
Nomenclature
Taxonomy and phylogenetics.