Olga V Golyshina, Evgenii A Lunev, Marco A Distaso, Rafael Bargiela, Matthew C Gaines, Bertram Daum, Manuel Ferrer, Nicole J Bale, Michel Koenen, Jaap S Sinninghe Damsté, Mikhail M Yakimov, Peter N Golyshin
{"title":"Oxyplasma meridianum gen.","authors":"Olga V Golyshina, Evgenii A Lunev, Marco A Distaso, Rafael Bargiela, Matthew C Gaines, Bertram Daum, Manuel Ferrer, Nicole J Bale, Michel Koenen, Jaap S Sinninghe Damsté, Mikhail M Yakimov, Peter N Golyshin","doi":"10.1099/ijsem.0.006499","DOIUrl":null,"url":null,"abstract":"<p><p>A mesophilic, hyperacidophilic archaeon, strain M1<sup>T</sup>, was isolated from a rock sample from Vulcano Island, Italy. Cells of this organism were cocci with an average diameter of 1 µm. Some cells possessed filaments. The strain grew in the range of temperatures between 15 and 52 °C and pH 0.5-4.0 with growth optima at 40 °C and pH 1.0. Strain M1<sup>T</sup> was aerobic and chemoorganotrophic, growing on complex substrates, such as casamino acids, trypticase, tryptone, yeast and beef extracts. No growth at expenses of oxidation of elemental sulphur or reduced sulphur compounds, pyrite, or ferrous sulphate was observed. The core lipids were glycerol dibiphytanyl glycerol tetraether lipids (membrane spanning) with 0 to 4 cyclopentane moieties and archaeol, with trace amounts of hydroxy archaeol. The dominant quinone was MK-7 : 7. The genome size of M1<sup>T</sup> was 1.67 Mbp with a G+C content of 39.76 mol%, and both characteristics were well within the common range for <i>Thermoplasmatales</i>. The phylogenetic analysis based on 16S rRNA gene sequence placed the strain M1<sup>T</sup> within the order <i>Thermoplasmatales</i> with sequence identities of 90.9, 90.3 and 90.5% to the closest SSU rRNA gene sequences from organisms with validly published names, <i>Thermoplasma acidophilum</i>, <i>Thermoplasma volcanium</i> and <i>Thermogymnomonas acidicola</i>, respectively. Based on the results of our genomic, phylogenetic, physiological and chemotaxonomic studies, we propose that strain M1<sup>T</sup> (=DSM 116605<sup>T</sup>=JCM 36570<sup>T</sup>) represents a new genus and species, <i>Oxyplasma meridianum</i> gen. nov., sp. nov., within the order <i>Thermoplasmatales</i>.</p>","PeriodicalId":14390,"journal":{"name":"International journal of systematic and evolutionary microbiology","volume":"74 8","pages":""},"PeriodicalIF":2.0000,"publicationDate":"2024-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11349054/pdf/","citationCount":"0","resultStr":"{\"title\":\"<i>Oxyplasma meridianum</i> gen. nov., sp. nov., an extremely acidophilic organotrophic member of the order <i>Thermoplasmatales</i>.\",\"authors\":\"Olga V Golyshina, Evgenii A Lunev, Marco A Distaso, Rafael Bargiela, Matthew C Gaines, Bertram Daum, Manuel Ferrer, Nicole J Bale, Michel Koenen, Jaap S Sinninghe Damsté, Mikhail M Yakimov, Peter N Golyshin\",\"doi\":\"10.1099/ijsem.0.006499\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>A mesophilic, hyperacidophilic archaeon, strain M1<sup>T</sup>, was isolated from a rock sample from Vulcano Island, Italy. Cells of this organism were cocci with an average diameter of 1 µm. Some cells possessed filaments. The strain grew in the range of temperatures between 15 and 52 °C and pH 0.5-4.0 with growth optima at 40 °C and pH 1.0. Strain M1<sup>T</sup> was aerobic and chemoorganotrophic, growing on complex substrates, such as casamino acids, trypticase, tryptone, yeast and beef extracts. No growth at expenses of oxidation of elemental sulphur or reduced sulphur compounds, pyrite, or ferrous sulphate was observed. The core lipids were glycerol dibiphytanyl glycerol tetraether lipids (membrane spanning) with 0 to 4 cyclopentane moieties and archaeol, with trace amounts of hydroxy archaeol. The dominant quinone was MK-7 : 7. The genome size of M1<sup>T</sup> was 1.67 Mbp with a G+C content of 39.76 mol%, and both characteristics were well within the common range for <i>Thermoplasmatales</i>. The phylogenetic analysis based on 16S rRNA gene sequence placed the strain M1<sup>T</sup> within the order <i>Thermoplasmatales</i> with sequence identities of 90.9, 90.3 and 90.5% to the closest SSU rRNA gene sequences from organisms with validly published names, <i>Thermoplasma acidophilum</i>, <i>Thermoplasma volcanium</i> and <i>Thermogymnomonas acidicola</i>, respectively. Based on the results of our genomic, phylogenetic, physiological and chemotaxonomic studies, we propose that strain M1<sup>T</sup> (=DSM 116605<sup>T</sup>=JCM 36570<sup>T</sup>) represents a new genus and species, <i>Oxyplasma meridianum</i> gen. nov., sp. nov., within the order <i>Thermoplasmatales</i>.</p>\",\"PeriodicalId\":14390,\"journal\":{\"name\":\"International journal of systematic and evolutionary microbiology\",\"volume\":\"74 8\",\"pages\":\"\"},\"PeriodicalIF\":2.0000,\"publicationDate\":\"2024-08-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11349054/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"International journal of systematic and evolutionary microbiology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1099/ijsem.0.006499\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"International journal of systematic and evolutionary microbiology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1099/ijsem.0.006499","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"MICROBIOLOGY","Score":null,"Total":0}
Oxyplasma meridianum gen. nov., sp. nov., an extremely acidophilic organotrophic member of the order Thermoplasmatales.
A mesophilic, hyperacidophilic archaeon, strain M1T, was isolated from a rock sample from Vulcano Island, Italy. Cells of this organism were cocci with an average diameter of 1 µm. Some cells possessed filaments. The strain grew in the range of temperatures between 15 and 52 °C and pH 0.5-4.0 with growth optima at 40 °C and pH 1.0. Strain M1T was aerobic and chemoorganotrophic, growing on complex substrates, such as casamino acids, trypticase, tryptone, yeast and beef extracts. No growth at expenses of oxidation of elemental sulphur or reduced sulphur compounds, pyrite, or ferrous sulphate was observed. The core lipids were glycerol dibiphytanyl glycerol tetraether lipids (membrane spanning) with 0 to 4 cyclopentane moieties and archaeol, with trace amounts of hydroxy archaeol. The dominant quinone was MK-7 : 7. The genome size of M1T was 1.67 Mbp with a G+C content of 39.76 mol%, and both characteristics were well within the common range for Thermoplasmatales. The phylogenetic analysis based on 16S rRNA gene sequence placed the strain M1T within the order Thermoplasmatales with sequence identities of 90.9, 90.3 and 90.5% to the closest SSU rRNA gene sequences from organisms with validly published names, Thermoplasma acidophilum, Thermoplasma volcanium and Thermogymnomonas acidicola, respectively. Based on the results of our genomic, phylogenetic, physiological and chemotaxonomic studies, we propose that strain M1T (=DSM 116605T=JCM 36570T) represents a new genus and species, Oxyplasma meridianum gen. nov., sp. nov., within the order Thermoplasmatales.
期刊介绍:
Published by the Microbiology Society and owned by the International Committee on Systematics of Prokaryotes (ICSP), a committee of the Bacteriology and Applied Microbiology Division of the International Union of Microbiological Societies, International Journal of Systematic and Evolutionary Microbiology is the leading forum for the publication of novel microbial taxa and the ICSP’s official journal of record for prokaryotic names.
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Identification, characterisation and culture preservation
Microbial evolution and biodiversity
Molecular environmental work with strong taxonomic or evolutionary content
Nomenclature
Taxonomy and phylogenetics.