迎接植物微生物组系统的复杂性。

IF 3.6 4区 生物学 Q2 ENVIRONMENTAL SCIENCES
María Josefina Poupin, Bernardo González
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引用次数: 0

摘要

尽管最近在了解微生物在植物全生物体代谢、生理和适应性中的作用方面取得了进展,但仍有几个相关问题有待解答,这对生态学、进化和可持续农业都有影响。本文探讨了其中一些问题,并讨论了植物微生物组的新兴研究领域。首先,文章强调有必要超越分类学特征描述,进而了解微生物在植物生态系统中的功能。其次,控制方法偏差和加强 OMICS 技术的标准化是深入理解植物微生物群相互作用的当务之急。此外,植物微生物区系研究主要集中在细菌和真菌上,而古细菌、病毒和微真核细胞等其他微生物在很大程度上被忽视了。新的证据突显了它们的存在和潜在作用,强调了进行全面评估的必要性。未来的研究应着眼于阐明生态微生物的相互作用、它们对植物表现的影响以及植物环境如何影响微生物群落动态。最后,还讨论了影响植物-微生物群系时空动态的多层次非生物和生物因素如何需要深入关注。举例说明了合成群落和计算方法(如机器学习和人工智能)如何为应对这些挑战和分析作为复杂系统的植物全生物体提供替代方案。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Embracing complexity in plant–microbiome systems

Embracing complexity in plant–microbiome systems

Embracing complexity in plant–microbiome systems

Despite recent advances in understanding the role of microorganisms in plant holobiont metabolism, physiology, and fitness, several relevant questions are yet to be answered, with implications for ecology, evolution, and sustainable agriculture. This article explores some of these questions and discusses emerging research areas in plant microbiomes. Firstly, it emphasizes the need to move beyond taxonomic characterization towards understanding microbial functions within plant ecosystems. Secondly, controlling methodological biases and enhancing OMICS technologies' standardization is imperative for a deeper comprehension of plant–microbiota interactions. Furthermore, while plant microbiota research has primarily centred on bacteria and fungi, other microbial players such as archaea, viruses, and microeukaryotes have been largely overlooked. Emerging evidence highlights their presence and potential roles, underscoring the need for thorough assessments. Future research should aim to elucidate the ecological microbial interactions, their impact on plant performance, and how the plant context shapes microbial community dynamics. Finally, a discussion is provided on how the multiple layers of abiotic and biotic factors influencing the spatiotemporal dynamics of plant–microbiome systems require in-depth attention. Examples illustrate how synthetic communities and computational methods such as machine learning and artificial intelligence provide alternatives to tackle these challenges and analyse the plant holobiont as a complex system.

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来源期刊
Environmental Microbiology Reports
Environmental Microbiology Reports ENVIRONMENTAL SCIENCES-MICROBIOLOGY
CiteScore
6.00
自引率
3.00%
发文量
91
审稿时长
3.0 months
期刊介绍: The journal is identical in scope to Environmental Microbiology, shares the same editorial team and submission site, and will apply the same high level acceptance criteria. The two journals will be mutually supportive and evolve side-by-side. Environmental Microbiology Reports provides a high profile vehicle for publication of the most innovative, original and rigorous research in the field. The scope of the Journal encompasses the diversity of current research on microbial processes in the environment, microbial communities, interactions and evolution and includes, but is not limited to, the following: the structure, activities and communal behaviour of microbial communities microbial community genetics and evolutionary processes microbial symbioses, microbial interactions and interactions with plants, animals and abiotic factors microbes in the tree of life, microbial diversification and evolution population biology and clonal structure microbial metabolic and structural diversity microbial physiology, growth and survival microbes and surfaces, adhesion and biofouling responses to environmental signals and stress factors modelling and theory development pollution microbiology extremophiles and life in extreme and unusual little-explored habitats element cycles and biogeochemical processes, primary and secondary production microbes in a changing world, microbially-influenced global changes evolution and diversity of archaeal and bacterial viruses new technological developments in microbial ecology and evolution, in particular for the study of activities of microbial communities, non-culturable microorganisms and emerging pathogens.
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