学习无定形表面的吸附模式

IF 5.5 1区 化学 Q2 CHEMISTRY, PHYSICAL
Journal of Chemical Theory and Computation Pub Date : 2024-09-10 Epub Date: 2024-08-26 DOI:10.1021/acs.jctc.4c00702
Mattia Turchi, Sandra Galmarini, Ivan Lunati
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引用次数: 0

摘要

无定形表面上的物理化学异质性导致吸附剂分子与拓扑缺陷和配位不足缺陷发生复杂的相互作用,从而增强吸附能力并参与催化反应。要识别和分析在非晶体表面观察到的吸附结构,需要新颖的工具,将表面分割成复杂形状的区域,与晶体表面的周期性模式形成对比。我们提出了一种随机森林(RF)分类器,可将表面分割成若干区域,然后对这些区域进行进一步分析和分类,以揭示与吸附剂相互作用的动态。射频分割适用于吸附分子的表面密度图,并采用了多种非局部特征(强度、梯度和黑森矩阵的特征值),可以更好地识别吸附结构。分割取决于一组指定训练集的参数,可以根据分割的具体目的进行调整。在此,我们以一个例子为例,说明如何将高异质性区域与弱异质性区域区分开来。我们证明,射频分割能够将表面分为完全连接的弱异质区域(其行为与结晶表面有些类似,具有指数分布的停留时间)和具有复杂停留时间分布特征的高异质区域,后者由欠协调缺陷产生,是非晶表面特殊性的原因。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Learning Adsorption Patterns on Amorphous Surfaces.

The physicochemical heterogeneity found on amorphous surfaces leads to a complex interaction of adsorbate molecules with topological and undercoordinated defects, which enhance the adsorption capacity and can participate in catalytic reactions. The identification and analysis of the adsorption structure observed on amorphous surfaces require novel tools that allow the segmentation of the surfaces into complex-shaped regions that contrast with the periodic patterns found on crystalline surfaces. We propose a Random Forest (RF) classifier that segments the surface into regions that can then be further analyzed and classified to reveal the dynamics of the interaction with the adsorbate. The RF segmentation is applied to the surface density map of the adsorbed molecules and employs multiple features (intensity, gradient, and the eigenvalues of the Hessian matrix) which are nonlocal and allow a better identification of the adsorption structures. The segmentation depends on a set of parameters that specify the training set and can be tailored to serve the specific purpose of the segmentation. Here, we consider an example in which we aim to separate highly heterogeneous regions from weakly heterogeneous regions. We demonstrate that the RF segmentation is able to separate the surface into a fully connected weakly heterogeneous region (whose behavior is somehow similar to crystalline surfaces and has an exponential distribution of the residence time) and a very heterogeneous region characterized by a complex residence-time distribution, which is generated by the undercoordinated defects and is responsible for the peculiar characteristics of the amorphous surface.

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来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
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