揭示 TSPAN7 在不同肿瘤中的独特作用:一项结合回顾性临床研究和生物信息学分析的泛癌症研究。

IF 5.7 2区 生物学 Q1 BIOLOGY
Bingnan Lu, Yifan Liu, Yuntao Yao, Dawei Zhu, Xiangmin Zhang, Keqin Dong, Xiao Xu, Donghao Lv, Zihui Zhao, Haoyu Zhang, Xinyue Yang, Wenjia Fu, Runzhi Huang, Jianwei Cao, Jian Chu, Xiuwu Pan, Xingang Cui
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引用次数: 0

摘要

背景TSPAN7是肿瘤进展的一个重要因素。然而,TSPAN7的确切功能及其在泛癌症中的作用尚不清楚:方法:以新华队列中的 370 例肾脏肿瘤患者为研究对象,采用免疫组化方法对肿瘤组织和正常组织进行差异表达分析,探讨 TSPAN7 与患者生存的相关性。随后,我们进行了一项泛癌症研究,先后采用了差异表达分析、竞争性内源性 RNA(ceRNA)分析、蛋白-蛋白相互作用(PPI)分析,以及 TSPAN7 与临床特征、肿瘤纯度、肿瘤基因组学、肿瘤免疫和药物敏感性的相关性分析。最后,应用基因组富集分析确定了TSPAN7的富集通路:结果:在新华队列中,TSPAN7在肾脏肿瘤患者的肿瘤组织中表达明显上调(P值=0.0019)。TSPAN7的高表达与总生存期(OS)(P值=0.009)和无进展生存期(P值=0.009)的下降有关,并被进一步揭示为OS的独立危险因素(P值=0.0326,HR=5.66,95%CI=1.155-27.8)。在泛癌症分析中,TSPAN7在大多数肿瘤中表达下调,并且与患者生存、肿瘤纯度、肿瘤基因组学、肿瘤免疫和药物敏感性相关。此外,还构建了 TSPAN7 的 ceRNA 网络和 PPI 网络。最后,还确定了TSPAN7在各种肿瘤中的前五大富集通路:结论:TSPAN7是多种肿瘤,尤其是肾脏肿瘤的一种有前景的生物标记物,它与肿瘤纯度、肿瘤基因组学、肿瘤免疫学和泛癌水平的药物敏感性密切相关。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Unveiling the unique role of TSPAN7 across tumors: a pan-cancer study incorporating retrospective clinical research and bioinformatic analysis.

Background: TSPAN7 is an important factor in tumor progression. However, the precise function of TSPAN7 and its role in pan-cancer are not clear.

Methods: Based on Xinhua cohort incorporating 370 patients with kidney neoplasm, we conducted differential expression analysis by immunohistochemistry between tumor and normal tissues, and explored correlations of TSPAN7 with patients' survival. Subsequently, we conducted a pan-cancer study, and successively employed differential expression analysis, competing endogenous RNA (ceRNA) analysis, protein-protein interaction (PPI) analysis, correlation analysis of TSPAN7 with clinical characteristics, tumor purity, tumor genomics, tumor immunity, and drug sensitivity. Last but not least, gene set enrichment analysis was applied to identify enriched pathways of TSPAN7.

Results: In Xinhua cohort, TSPAN7 expression was significantly up-regulated (P-value = 0.0019) in tumor tissues of kidney neoplasm patients. High TSPAN7 expression was associated with decreases in overall survival (OS) (P-value = 0.009) and progression-free survival (P-value = 0.009), and it was further revealed as an independent risk factor for OS (P-value = 0.0326, HR = 5.66, 95%CI = 1.155-27.8). In pan-cancer analysis, TSPAN7 expression was down-regulated in most tumors, and it was associated with patients' survival, tumor purity, tumor genomics, tumor immunity, and drug sensitivity. The ceRNA network and PPI network of TSPAN7 were also constructed. Last but not least, the top five enriched pathways of TSPAN7 in various tumors were identified.

Conclusion: TSPAN7 served as a promising biomarker of various tumors, especially kidney neoplasms, and it was closely associated with tumor purity, tumor genomics, tumor immunology, and drug sensitivity in pan-cancer level.

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来源期刊
Biology Direct
Biology Direct 生物-生物学
CiteScore
6.40
自引率
10.90%
发文量
32
审稿时长
7 months
期刊介绍: Biology Direct serves the life science research community as an open access, peer-reviewed online journal, providing authors and readers with an alternative to the traditional model of peer review. Biology Direct considers original research articles, hypotheses, comments, discovery notes and reviews in subject areas currently identified as those most conducive to the open review approach, primarily those with a significant non-experimental component.
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