二硫化相关LncRNA特征可预测肾透明细胞癌的预后和免疫反应

IF 5.7 2区 生物学 Q1 BIOLOGY
Kangjie Xu, Dongling Li, Kangkang Ji, Yanhua Zhang, Minglei Zhang, Hai Zhou, Xuefeng Hou, Jian Jiang, Zihang Zhang, Hua Dai, Hang Sun
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引用次数: 0

摘要

背景:肾脏透明细胞癌(KIRC)在肾细胞癌中占很大比例,尽管免疫疗法取得了进展,但其特点是侵袭性强、预后差。二硫化硫是一种新型细胞死亡途径,已成为包括癌症在内的各种细胞过程中的关键机制。本研究利用机器学习技术鉴定出与二硫化相关的长非编码RNA(DRlncRNAs)作为KIRC的潜在预后生物标志物,为肿瘤发病机制和治疗途径提供了新的见解:我们对癌症基因组图谱(The Cancer Genome Atlas,TCGA)中的数据进行了分析,发现了431个与二硫化相关基因相关的DRlncRNAs。我们利用五个关键的DRlncRNA(SPINT1-AS1、AL161782.1、OVCH1-AS1、AC131009.3和AC108673.3)建立了一个预后模型,该模型能有效区分低危和高危患者,并在总生存期和无进展生存期方面存在显著差异。低风险组的预后良好,这与保护性免疫微环境和对靶向药物的较好反应有关。相反,高危组则表现出侵袭性肿瘤特征,免疫治疗效果不佳。通过 qRT-PCR 验证证实,与正常肾细胞相比,这些 DRlncRNAs 在 KIRC 细胞中的表达存在差异,突显了它们在肿瘤生物学中的潜在功能意义:这项研究在二硫化相关lncRNAs与KIRC患者预后之间建立了强有力的联系,强调了它们作为预后生物标志物和治疗靶点的潜力。这些lncRNAs在肿瘤组织与正常组织中的表达差异进一步凸显了它们在KIRC发病机制中的相关性。该预测模型不仅增强了我们对 KIRC 生物学的了解,还为精准医疗方法提供了一种新的分层工具,改善了 KIRC 患者的个性化治疗和预后。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Disulfidptosis-associated LncRNA signature predicts prognosis and immune response in kidney renal clear cell carcinoma.

Background: Kidney renal clear cell carcinoma (KIRC) represents a significant proportion of renal cell carcinomas and is characterized by high aggressiveness and poor prognosis despite advancements in immunotherapy. Disulfidptosis, a novel cell death pathway, has emerged as a critical mechanism in various cellular processes, including cancer. This study leverages machine learning to identify disulfidptosis-related long noncoding RNAs (DRlncRNAs) as potential prognostic biomarkers in KIRC, offering new insights into tumor pathogenesis and treatment avenues.

Results: Our analysis of data from The Cancer Genome Atlas (TCGA) led to the identification of 431 DRlncRNAs correlated with disulfidptosis-related genes. Five key DRlncRNAs (SPINT1-AS1, AL161782.1, OVCH1-AS1, AC131009.3, and AC108673.3) were used to develop a prognostic model that effectively distinguished between low- and high-risk patients with significant differences in overall survival and progression-free survival. The low-risk group had a favorable prognosis associated with a protective immune microenvironment and a better response to targeted drugs. Conversely, the high-risk group displayed aggressive tumor features and poor immunotherapy outcomes. Validation through qRT‒PCR confirmed the differential expression of these DRlncRNAs in KIRC cells compared to normal kidney cells, underscoring their potential functional significance in tumor biology.

Conclusions: This study established a robust link between disulfidptosis-related lncRNAs and patient prognosis in KIRC, underscoring their potential as prognostic biomarkers and therapeutic targets. The differential expression of these lncRNAs in tumor versus normal tissue further highlights their relevance in KIRC pathogenesis. The predictive model not only enhances our understanding of KIRC biology but also provides a novel stratification tool for precision medicine approaches, improving treatment personalization and outcomes in KIRC patients.

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来源期刊
Biology Direct
Biology Direct 生物-生物学
CiteScore
6.40
自引率
10.90%
发文量
32
审稿时长
7 months
期刊介绍: Biology Direct serves the life science research community as an open access, peer-reviewed online journal, providing authors and readers with an alternative to the traditional model of peer review. Biology Direct considers original research articles, hypotheses, comments, discovery notes and reviews in subject areas currently identified as those most conducive to the open review approach, primarily those with a significant non-experimental component.
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