极地海洋沿岸沉积物中生物聚合物加工的不同驱动机制。

IF 4.3 2区 生物学 Q2 MICROBIOLOGY
Katrin Knittel, Sebastian Miksch, Chyrene Moncada, Sebastian Silva-Solar, Jannika Moye, Rudolf Amann, Carol Arnosti
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引用次数: 0

摘要

海洋中的异养细菌利用胞外酶启动生物聚合物降解,在环境中产生低分子量的水解产物,或利用自私的吸收机制将水解产物保留给产酶细胞。所使用的机制会影响水解产物对其他细菌的可用性,从而也可能影响群落的组成和活性。在海洋系统中,这两种基质处理机制已在水体中进行过研究,但迄今为止尚未在沉积物中进行过研究。在斯瓦尔巴群岛北极峡湾的表层沉积物中,我们利用四种多糖和一种糖蛋白粘蛋白研究了生物聚合物水解的机制。所有生物聚合物的胞外水解都很迅速。此外,粘蛋白的快速降解表明它可能是底栖微生物的关键底物。虽然自私吸收在海水中很常见,但只有一小部分(0.5%-2%)粘附在沉积物上的微生物使用这种机制。自私吸收主要是由 Planctomycetota 和 Verrucomicrobiota 进行的。然而,沉积物中细胞外水解的总体主导地位表明,大部分生物聚合物加工是由底栖生物群落依靠共享酶能力和清除公共物品进行的。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Distinct actors drive different mechanisms of biopolymer processing in polar marine coastal sediments

Distinct actors drive different mechanisms of biopolymer processing in polar marine coastal sediments

Heterotrophic bacteria in the ocean initiate biopolymer degradation using extracellular enzymes that yield low molecular weight hydrolysis products in the environment, or by using a selfish uptake mechanism that retains the hydrolysate for the enzyme-producing cell. The mechanism used affects the availability of hydrolysis products to other bacteria, and thus also potentially the composition and activity of the community. In marine systems, these two mechanisms of substrate processing have been studied in the water column, but to date, have not been investigated in sediments. In surface sediments from an Arctic fjord of Svalbard, we investigated mechanisms of biopolymer hydrolysis using four polysaccharides and mucin, a glycoprotein. Extracellular hydrolysis of all biopolymers was rapid. Moreover, rapid degradation of mucin suggests that it may be a key substrate for benthic microbes. Although selfish uptake is common in ocean waters, only a small fraction (0.5%–2%) of microbes adhering to sediments used this mechanism. Selfish uptake was carried out primarily by Planctomycetota and Verrucomicrobiota. The overall dominance of extracellular hydrolysis in sediments, however, suggests that the bulk of biopolymer processing is carried out by a benthic community relying on the sharing of enzymatic capabilities and scavenging of public goods.

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来源期刊
Environmental microbiology
Environmental microbiology 环境科学-微生物学
CiteScore
9.90
自引率
3.90%
发文量
427
审稿时长
2.3 months
期刊介绍: Environmental Microbiology provides a high profile vehicle for publication of the most innovative, original and rigorous research in the field. The scope of the Journal encompasses the diversity of current research on microbial processes in the environment, microbial communities, interactions and evolution and includes, but is not limited to, the following: the structure, activities and communal behaviour of microbial communities microbial community genetics and evolutionary processes microbial symbioses, microbial interactions and interactions with plants, animals and abiotic factors microbes in the tree of life, microbial diversification and evolution population biology and clonal structure microbial metabolic and structural diversity microbial physiology, growth and survival microbes and surfaces, adhesion and biofouling responses to environmental signals and stress factors modelling and theory development pollution microbiology extremophiles and life in extreme and unusual little-explored habitats element cycles and biogeochemical processes, primary and secondary production microbes in a changing world, microbially-influenced global changes evolution and diversity of archaeal and bacterial viruses new technological developments in microbial ecology and evolution, in particular for the study of activities of microbial communities, non-culturable microorganisms and emerging pathogens
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