自上而下的基因上调而非微生物群落多样性在解释局部尺度的垃圾分解过程中的作用

IF 5.1 1区 农林科学 Q1 SOIL SCIENCE
Xingzhou Huang, Fangping Li, Fuzhong Wu, Xinying Zhang, Xiangyin Ni
{"title":"自上而下的基因上调而非微生物群落多样性在解释局部尺度的垃圾分解过程中的作用","authors":"Xingzhou Huang, Fangping Li, Fuzhong Wu, Xinying Zhang, Xiangyin Ni","doi":"10.1007/s00374-024-01857-2","DOIUrl":null,"url":null,"abstract":"<p>Litter decomposition has historically been attributed to soil microbial community at local scale, but which fundamental process directly contributes to carbon release from decomposing litter remains not fully understood. Here we used in situ microcosms to assess the temporal changes in soil microbial biomass, taxonomic composition, alpha and beta diversity, network complexity and carbon-degrading functional genes during litter decomposition of a subtropical dominant species (<i>Castanopsis carlesii</i>) in an older (45-years) and a younger (9-years) evergreen broadleaved forests. The soil phospholipid fatty acids, bacterial and fungal community composition, α-diversity indexes and network topological properties were not changed significantly after short-term litter input when litter was decomposed by approximately 70%. However, the absolute abundance of functional genes involved in the decomposition of starch, pectin, hemicellulose, cellulose, chitin and lignin were up-regulated, and these variations were associated with soil α-1.4-glucosidase, β-glucosidase and cellobiohydrolase activities in contributing to litter carbon release during decomposition. These results suggest that the upregulation of functional genes rather than microbial community composition and diversity controls local-scale litter decomposition by encoding and secreting enzymes in these subtropical forests.</p>","PeriodicalId":9210,"journal":{"name":"Biology and Fertility of Soils","volume":"30 1","pages":""},"PeriodicalIF":5.1000,"publicationDate":"2024-08-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Top-down gene upregulation and not microbial community diversity in explaining local-scale litter decomposition\",\"authors\":\"Xingzhou Huang, Fangping Li, Fuzhong Wu, Xinying Zhang, Xiangyin Ni\",\"doi\":\"10.1007/s00374-024-01857-2\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>Litter decomposition has historically been attributed to soil microbial community at local scale, but which fundamental process directly contributes to carbon release from decomposing litter remains not fully understood. Here we used in situ microcosms to assess the temporal changes in soil microbial biomass, taxonomic composition, alpha and beta diversity, network complexity and carbon-degrading functional genes during litter decomposition of a subtropical dominant species (<i>Castanopsis carlesii</i>) in an older (45-years) and a younger (9-years) evergreen broadleaved forests. The soil phospholipid fatty acids, bacterial and fungal community composition, α-diversity indexes and network topological properties were not changed significantly after short-term litter input when litter was decomposed by approximately 70%. However, the absolute abundance of functional genes involved in the decomposition of starch, pectin, hemicellulose, cellulose, chitin and lignin were up-regulated, and these variations were associated with soil α-1.4-glucosidase, β-glucosidase and cellobiohydrolase activities in contributing to litter carbon release during decomposition. These results suggest that the upregulation of functional genes rather than microbial community composition and diversity controls local-scale litter decomposition by encoding and secreting enzymes in these subtropical forests.</p>\",\"PeriodicalId\":9210,\"journal\":{\"name\":\"Biology and Fertility of Soils\",\"volume\":\"30 1\",\"pages\":\"\"},\"PeriodicalIF\":5.1000,\"publicationDate\":\"2024-08-21\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Biology and Fertility of Soils\",\"FirstCategoryId\":\"97\",\"ListUrlMain\":\"https://doi.org/10.1007/s00374-024-01857-2\",\"RegionNum\":1,\"RegionCategory\":\"农林科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"SOIL SCIENCE\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biology and Fertility of Soils","FirstCategoryId":"97","ListUrlMain":"https://doi.org/10.1007/s00374-024-01857-2","RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"SOIL SCIENCE","Score":null,"Total":0}
引用次数: 0

摘要

垃圾的分解历来归因于局部尺度的土壤微生物群落,但究竟是哪个基本过程直接导致了垃圾分解过程中的碳释放仍未完全明了。在这里,我们使用原位微观模拟器评估了在一片较老(45 年)和一片较新(9 年)的常绿阔叶林中,一种亚热带优势树种(Castanopsis carlesii)的枯落物分解过程中,土壤微生物生物量、分类组成、α和β多样性、网络复杂性和碳降解功能基因的时间变化。当废弃物分解约 70% 时,土壤磷脂脂肪酸、细菌和真菌群落组成、α-多样性指数和网络拓扑特性在短期废弃物投入后没有发生显著变化。然而,参与分解淀粉、果胶、半纤维素、纤维素、几丁质和木质素的功能基因的绝对丰度被上调,这些变化与土壤中α-1.4-葡萄糖苷酶、β-葡萄糖苷酶和纤维素水解酶的活性有关,它们在分解过程中有助于垃圾碳的释放。这些结果表明,在这些亚热带森林中,是功能基因的上调而不是微生物群落的组成和多样性通过编码和分泌酶来控制局部范围的枯落物分解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Top-down gene upregulation and not microbial community diversity in explaining local-scale litter decomposition

Top-down gene upregulation and not microbial community diversity in explaining local-scale litter decomposition

Litter decomposition has historically been attributed to soil microbial community at local scale, but which fundamental process directly contributes to carbon release from decomposing litter remains not fully understood. Here we used in situ microcosms to assess the temporal changes in soil microbial biomass, taxonomic composition, alpha and beta diversity, network complexity and carbon-degrading functional genes during litter decomposition of a subtropical dominant species (Castanopsis carlesii) in an older (45-years) and a younger (9-years) evergreen broadleaved forests. The soil phospholipid fatty acids, bacterial and fungal community composition, α-diversity indexes and network topological properties were not changed significantly after short-term litter input when litter was decomposed by approximately 70%. However, the absolute abundance of functional genes involved in the decomposition of starch, pectin, hemicellulose, cellulose, chitin and lignin were up-regulated, and these variations were associated with soil α-1.4-glucosidase, β-glucosidase and cellobiohydrolase activities in contributing to litter carbon release during decomposition. These results suggest that the upregulation of functional genes rather than microbial community composition and diversity controls local-scale litter decomposition by encoding and secreting enzymes in these subtropical forests.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Biology and Fertility of Soils
Biology and Fertility of Soils 农林科学-土壤科学
CiteScore
11.80
自引率
10.80%
发文量
62
审稿时长
2.2 months
期刊介绍: Biology and Fertility of Soils publishes in English original papers, reviews and short communications on all fundamental and applied aspects of biology – microflora and microfauna - and fertility of soils. It offers a forum for research aimed at broadening the understanding of biological functions, processes and interactions in soils, particularly concerning the increasing demands of agriculture, deforestation and industrialization. The journal includes articles on techniques and methods that evaluate processes, biogeochemical interactions and ecological stresses, and sometimes presents special issues on relevant topics.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信