中国西北高山地区 Colias sifanica Grum-Grshimailo, 1891(鳞翅目:墩科)的完整线粒体基因组。

Pub Date : 2024-08-19 eCollection Date: 2024-01-01 DOI:10.1080/23802359.2024.2392760
Ying Wang, Zeyu Hu, Liufang Wei, Fengying Wan, Fanyu Wei, Jiasheng Hao, Chengyong Su
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引用次数: 0

摘要

Colias sifanica Grum-Grshimailo, 1891 是一种典型的高山蝴蝶物种,分布于中国青藏高原及其邻近地区。本研究利用新一代测序技术获得的数据,构建了该物种完整的线粒体基因组。线粒体基因组全长15,151 bp,包括13个蛋白质编码基因(PCGs)、2个核糖体RNA基因、22个转运RNA基因和一个控制区。C. sifanica有丝分裂基因组的碱基组成为 39.7% A、41.3% T、11.3% C 和 7.7% G,与其他 Pieridae 有丝分裂基因组一样明显偏向 AT。利用最大似然法和贝叶斯推断法对所有 PCG 进行的系统发生分析表明,C. sifanica 与 C. fieldii 亲缘关系密切,支持值很高,Coliadini 科的系统发生关系为 (Dercas + ((Gandaca + Gonepteryx) + (Phoebis + (Anteos + (Catopsilia + (Zerene + Colias))))))))。尽管发现有丝分裂基因组的基因顺序和总体碱基组成是一致的,但在 Colias 和 Coliadini 科的其他物种之间,发现有丝分裂基因组 PCGs 的 Ka/Ks 比值不同。
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Complete mitochondrial genome of Colias sifanica Grum-Grshimailo, 1891 (Lepidoptera: Pieridae) from montane region in northwestern China.

Colias sifanica Grum-Grshimailo, 1891, is a typical montane butterfly species which occurs on the Qinghai-Tibet Plateau (QTP) and adjacent regions in China. In this study, the complete mitochondrial genome of this species was assembled from data generated by next-generation sequencing. The mitogenome was 15,151 bp in length and comprised 13 protein-coding genes (PCGs), 2 ribosomal RNA genes, 22 transfer RNA genes and a control region. The base composition of the C. sifanica mitogenome was 39.7% A, 41.3% T, 11.3% C and 7.7% G, significantly AT biased as commonly found in other Pieridae mitogenomes. Phylogenetic analyses based on all PCGs using both the maximum likelihood and Bayesian inference methods indicated that C. sifanica is closely related to C. fieldii with high support values, and the phylogenetic relationship of (Dercas + ((Gandaca + Gonepteryx) + (Phoebis + (Anteos + (Catopsilia + (Zerene + Colias))))))) was shown for the tribe Coliadini. Though both the mitogenomic gene order and overall base composition were found to be conserved, different Ka/Ks ratios for several mitogenomic PCGs were detected between Colias and other species in the tribe Coliadini.

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