对当代欧洲赤鹿遗传结构的全基因组 SNP 评估凸显了欧洲周边种群与主要混血区的区别。

IF 4.5 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY
Juan Carranza, Javier Pérez-González, Gabriel Anaya, Menno de Jong, Camilla Broggini, Frank E. Zachos, Allan D. McDevitt, Magdalena Niedziałkowska, Maciej Sykut, Sándor Csányi, Norber Bleier, Lázló Csirke, Knut Røed, Christine Saint-Andrieux, Aurelie Barboiron, Araceli Gort-Esteve, Jordi Ruiz-Olmo, Jose Manuel Seoane, Jose Antonio Godoy, Paweł Mackiewicz, Eva de la Peña, Giovanni Vedel, S. Eryn McFarlane, Josephine Pemberton, Alberto Membrillo
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引用次数: 0

摘要

全基因组技术为阐明以前用微卫星位点和线粒体序列研究的类群的遗传结构和系统地理历史问题提供了新的可能性。在这里,我们使用了 736 个通过 35,701 个单核苷酸多态性位点(SNPs)进行基因分型的红鹿(Cervus elaphus)样本,以评估该物种在整个欧洲的种群结构。结果发现了28个种群,与本土种群相比,外围种群的遗传差异程度更高。伊比利亚红鹿显示出较高的遗传分化,伊比利亚西部和中部的种系保持了其独特性,这支持了伊比利亚内部独立的庇护范围,以及伊比利亚种群与西欧其余种群之间几乎没有新的联系。挪威种群的变异性最低,与欧洲大陆种群的等位基因频率差异最大,这与冰川期后从南部避难地殖民的瓶颈和漂移历史相吻合。苏格兰种群与欧洲大陆的遗传距离较远,但多样性水平较高。在中欧以及比利牛斯山发现了东欧和西欧鹿系之间的杂交区,在比利牛斯山,来自法国的马鹿与伊比利亚马鹿密切接触。人为的重新放养促进了比利牛斯接触区、朗姆岛和荷兰种群的混杂事件,至少部分促进了中欧和东欧两个主要种群的混杂。我们的分析详细解析了这种广泛分布于欧洲的大型哺乳动物的种群结构,有助于了解其进化历史,从而为保护和管理政策提供依据。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Genome-wide SNP assessment of contemporary European red deer genetic structure highlights the distinction of peripheral populations and the main admixture zones in Europe

Genome-wide SNP assessment of contemporary European red deer genetic structure highlights the distinction of peripheral populations and the main admixture zones in Europe

Genome-wide technologies open up new possibilities to clarify questions on genetic structure and phylogeographic history of taxa previously studied with microsatellite loci and mitochondrial sequences. Here, we used 736 individual red deer (Cervus elaphus) samples genotyped at 35,701 single nucleotide polymorphism loci (SNPs) to assess the population structure of the species throughout Europe. The results identified 28 populations, with higher degrees of genetic distinction in peripheral compared to mainland populations. Iberian red deer show high genetic differentiation, with lineages in Western and Central Iberia maintaining their distinctiveness, which supports separate refugial ranges within Iberia along with little recent connection between Iberian and the remaining Western European populations. The Norwegian population exhibited the lowest variability and the largest allele frequency differences from mainland European populations, compatible with a history of bottlenecks and drift during post-glacial colonization from southern refugia. Scottish populations showed high genetic distance from the mainland but high levels of diversity. Hybrid zones were found between Eastern and Western European lineages in Central Europe as well as in the Pyrenees, where red deer from France are in close contact with Iberian red deer. Anthropogenic restocking has promoted the Pyrenean contact zone, admixture events in populations on the Isle of Rum and in the Netherlands, and at least partly the admixture of the two main lineages in central-eastern Europe. Our analysis enabled detailed resolution of population structure of a large mammal widely distributed throughout Europe and contributes to resolving the evolutionary history, which can also inform conservation and management policies.

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来源期刊
Molecular Ecology
Molecular Ecology 生物-进化生物学
CiteScore
8.40
自引率
10.20%
发文量
472
审稿时长
1 months
期刊介绍: Molecular Ecology publishes papers that utilize molecular genetic techniques to address consequential questions in ecology, evolution, behaviour and conservation. Studies may employ neutral markers for inference about ecological and evolutionary processes or examine ecologically important genes and their products directly. We discourage papers that are primarily descriptive and are relevant only to the taxon being studied. Papers reporting on molecular marker development, molecular diagnostics, barcoding, or DNA taxonomy, or technical methods should be re-directed to our sister journal, Molecular Ecology Resources. Likewise, papers with a strongly applied focus should be submitted to Evolutionary Applications. Research areas of interest to Molecular Ecology include: * population structure and phylogeography * reproductive strategies * relatedness and kin selection * sex allocation * population genetic theory * analytical methods development * conservation genetics * speciation genetics * microbial biodiversity * evolutionary dynamics of QTLs * ecological interactions * molecular adaptation and environmental genomics * impact of genetically modified organisms
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