功能数据和网络拓扑的回归和配准。

IF 1.8 3区 数学 Q3 MATHEMATICAL & COMPUTATIONAL BIOLOGY
Danni Tu, Julia Wrobel, Theodore D Satterthwaite, Jeff Goldsmith, Ruben C Gur, Raquel E Gur, Jan Gertheiss, Dani S Bassett, Russell T Shinohara
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引用次数: 0

摘要

在大脑中,功能连接形成了一个网络,其拓扑组织可以通过图论网络诊断来描述。其中包括群落结构的特征,如模块化和参与系数,这些特征已被证明会随着儿童和青少年时期的变化而变化。为了研究功能网络的这种变化是否与发育过程中认知能力的变化有关,网络研究通常依赖于对预处理参数的任意选择,特别是网络边缘的比例阈值。由于参数的选择会影响网络诊断的值,从而影响下游结论,因此我们建议将网络诊断概念化为参数的函数,以规避这种选择。与单一数值不同,网络诊断曲线描述了多个尺度的连接组拓扑结构--从最稀疏的最强边缘组到整个边缘集。为了将这些曲线与执行功能和其他协变量联系起来,我们使用了标量-功能回归,这比以往网络神经科学中使用的基于功能数据的模型更加灵活。然后,我们考虑了网络之间的系统性差异如何表现为诊断曲线的不对齐,并因此提出了一种包含其他变量辅助信息的监督曲线对齐方法。我们的算法通过迭代、惩罚和非线性似然优化来执行函数回归和配准。这种方法有望提高神经科学研究的可解释性和可推广性,因为神经科学研究的目标是研究函数值和标量值混合测量的异质性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Regression and alignment for functional data and network topology.

In the brain, functional connections form a network whose topological organization can be described by graph-theoretic network diagnostics. These include characterizations of the community structure, such as modularity and participation coefficient, which have been shown to change over the course of childhood and adolescence. To investigate if such changes in the functional network are associated with changes in cognitive performance during development, network studies often rely on an arbitrary choice of preprocessing parameters, in particular the proportional threshold of network edges. Because the choice of parameter can impact the value of the network diagnostic, and therefore downstream conclusions, we propose to circumvent that choice by conceptualizing the network diagnostic as a function of the parameter. As opposed to a single value, a network diagnostic curve describes the connectome topology at multiple scales-from the sparsest group of the strongest edges to the entire edge set. To relate these curves to executive function and other covariates, we use scalar-on-function regression, which is more flexible than previous functional data-based models used in network neuroscience. We then consider how systematic differences between networks can manifest in misalignment of diagnostic curves, and consequently propose a supervised curve alignment method that incorporates auxiliary information from other variables. Our algorithm performs both functional regression and alignment via an iterative, penalized, and nonlinear likelihood optimization. The illustrated method has the potential to improve the interpretability and generalizability of neuroscience studies where the goal is to study heterogeneity among a mixture of function- and scalar-valued measures.

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来源期刊
Biostatistics
Biostatistics 生物-数学与计算生物学
CiteScore
5.10
自引率
4.80%
发文量
45
审稿时长
6-12 weeks
期刊介绍: Among the important scientific developments of the 20th century is the explosive growth in statistical reasoning and methods for application to studies of human health. Examples include developments in likelihood methods for inference, epidemiologic statistics, clinical trials, survival analysis, and statistical genetics. Substantive problems in public health and biomedical research have fueled the development of statistical methods, which in turn have improved our ability to draw valid inferences from data. The objective of Biostatistics is to advance statistical science and its application to problems of human health and disease, with the ultimate goal of advancing the public''s health.
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