甘氨酰苯丙氨酸(GFG)肽基阳离子的结构和碎裂化学。

IF 2.6 3区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES
PLoS ONE Pub Date : 2024-08-13 eCollection Date: 2024-01-01 DOI:10.1371/journal.pone.0308164
Yinan Li, Justin Kai-Chi Lau, Teun van Wieringen, Jonathan Martens, Giel Berden, Jos Oomens, Alan C Hopkinson, K W Michael Siu, Ivan K Chu
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引用次数: 0

摘要

在本文中,我们探讨了甘氨酰苯丙氨酸或 [GFG]-+ 的自由基阳离子的生成和特性,这些阳离子是通过三肽与铜(II)在三元复合物中的离解电子转移反应形成的。利用同位素标记、红外多光子解离(IRMPD)光谱和密度泛函理论(DFT)计算进行的综合研究阐明了肽自由基阳离子及其解离产物形成的细节和能量。与主要形成典型π-自由基的传统含芳香族肽自由基阳离子不同,我们的研究结果表明,实验产生的[GFG]-+ 前体中有 75% 是[GFα-G]+,其中自由基位于苯丙氨酰残基的中间α-碳上。这种意想不到的异构离子的焓值比全局最小值高出 6.8 kcal/mol,其 N 端俘获结构为 [Gα-FG]+,占总数的 25%。根据 IRMPD 作用光谱与 [b₂-H]-+ 候选结构的预测红外吸收光谱之间的匹配以及 IRMPD 异构体群体分析,[b₂-H]-+ 产物离子也以 75/25 的比例存在于[GFα-G]+/ [Gα-FG]+ 中。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Structure and fragmentation chemistry of the peptide radical cations of glycylphenylalanylglycine (GFG).

Structure and fragmentation chemistry of the peptide radical cations of glycylphenylalanylglycine (GFG).

Structure and fragmentation chemistry of the peptide radical cations of glycylphenylalanylglycine (GFG).

Structure and fragmentation chemistry of the peptide radical cations of glycylphenylalanylglycine (GFG).

Herein, we explore the generation and characterization of the radical cations of glycylphenylalanylglycine, or [GFG]•+, formed via dissociative electron-transfer reaction from the tripeptide to copper(II) within a ternary complex. A comprehensive investigation employing isotopic labeling, infrared multiple-photon dissociation (IRMPD) spectroscopy, and density functional theory (DFT) calculations elucidated the details and energetics in formation of the peptide radical cations as well as their dissociation products. Unlike conventional aromatic-containing peptide radical cations that primarily form canonical π-radicals, our findings reveal that 75% of the population of the experimentally produced [GFG]•+ precursors are [GFα•G]+, where the radical resides on the middle α-carbon of the phenylalanyl residue. This unexpected isomeric ion has an enthalpy of 6.8 kcal/mol above the global minimum, which has an N-terminal captodative structure, [Gα•FG]+, comprising 25% of the population. The [b₂-H]•+ product ions are also present in a ratio of 75/25 from [GFα•G]+/ [Gα•FG]+, the results of which are obtained from matches between the IRMPD action spectrum and predicted IR absorption spectra of the [b₂-H]•+ candidate structures, as well as from IRMPD isomer population analyses.

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来源期刊
PLoS ONE
PLoS ONE 生物-生物学
CiteScore
6.20
自引率
5.40%
发文量
14242
审稿时长
3.7 months
期刊介绍: PLOS ONE is an international, peer-reviewed, open-access, online publication. PLOS ONE welcomes reports on primary research from any scientific discipline. It provides: * Open-access—freely accessible online, authors retain copyright * Fast publication times * Peer review by expert, practicing researchers * Post-publication tools to indicate quality and impact * Community-based dialogue on articles * Worldwide media coverage
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