NCBI Glycans 和 PubChem 中的糖科学数据内容。

IF 3.8 2区 化学 Q1 BIOCHEMICAL RESEARCH METHODS
Analytical and Bioanalytical Chemistry Pub Date : 2025-02-01 Epub Date: 2024-08-12 DOI:10.1007/s00216-024-05459-7
Sunghwan Kim, Jian Zhang, Tiejun Cheng, Qingliang Li, Evan E Bolton
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引用次数: 0

摘要

研究聚糖及其在体内的功能有助于了解疾病机制和开发新的治疗方法。这就需要有资源提供全面的聚糖数据,并将基因组学、遗传学、蛋白质组学、代谢组学和化学等其他科学领域的相关信息整合在一起。本文介绍了美国国家生物技术信息中心(NCBI)的两个资源:NCBI Glycans 和 PubChem,它们提供了对糖科学研究界有用的糖相关信息。NCBI Glycans ( https://www.ncbi.nlm.nih.gov/glycans/ ) 是美国国家生物技术信息中心(NCBI)专门提供糖生物学数据内容的网站,可快速访问分散在多个 NCBI 数据库以及 NCBI 外部其他信息资源中的糖相关信息。重要的是,NCBI Glycans 承载了聚糖符号命名法(SNFG)的官方网页,SNFG 是科学出版物推荐的聚糖结构标准图形表示法。另一方面,PubChem ( https://pubchem.ncbi.nlm.nih.gov ) 是一个以研究为重点的大型公共化学数据库,包含大量含有聚糖的记录,并与 GlyTouCan、GlyCosmos 和 GlyGen 等重要的聚糖科学资源进行了整合。PubChem 在多个数据集合(即:物质、化合物、蛋白质、聚糖和聚糖基因)中组织了与聚糖相关的信息、Substance, Compound, Protein, Gene, Pathway, and Taxonomy)中的聚糖相关信息,并提供各种工具和服务,允许用户通过网络浏览器交互式访问,或通过 RESTful 接口(包括 PUG-View)编程式访问。NCBI Glycans 和 PubChem 突出了与聚糖相关的数据,并提高了这些数据的可访问性,有助于科学家在研究中利用这些数据。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Glycoscience data content in the NCBI Glycans and PubChem.

Glycoscience data content in the NCBI Glycans and PubChem.

Studying glycans and their functions in the body aids in the understanding of disease mechanisms and developing new treatments. This necessitates resources that provide comprehensive glycan data integrated with relevant information from other scientific fields such as genomics, genetics, proteomics, metabolomics, and chemistry. The present paper describes two resources at the U.S. National Center for Biotechnology Information (NCBI), the NCBI Glycans and PubChem, which provide glycan-related information useful for the glycoscience research community. The NCBI Glycans ( https://www.ncbi.nlm.nih.gov/glycans/ ) is a dedicated website for glycobiology data content at NCBI and provides quick access to glycan-related information scattered across multiple NCBI databases as well as other information resources external to NCBI. Importantly, the NCBI Glycans hosts the official web page for the symbol nomenclature for glycans (SNFG), which is the standard graphical representation of glycan structures recommended for scientific publication. On the other hand, PubChem ( https://pubchem.ncbi.nlm.nih.gov ) is a research-focused, large-scale public chemical database, containing a substantial number of glycan-containing records and is integrated with important glycoscience resources like GlyTouCan, GlyCosmos, and GlyGen. PubChem organizes glycan-related information within multiple data collections (i.e., Substance, Compound, Protein, Gene, Pathway, and Taxonomy) and provides various tools and services that allow users to access them both interactively through a web browser and programmatically through a REST-ful interface, including PUG-View. The NCBI Glycans and PubChem highlight glycan-related data and improve their accessibility, helping scientists exploit these data in their research.

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来源期刊
CiteScore
8.00
自引率
4.70%
发文量
638
审稿时长
2.1 months
期刊介绍: Analytical and Bioanalytical Chemistry’s mission is the rapid publication of excellent and high-impact research articles on fundamental and applied topics of analytical and bioanalytical measurement science. Its scope is broad, and ranges from novel measurement platforms and their characterization to multidisciplinary approaches that effectively address important scientific problems. The Editors encourage submissions presenting innovative analytical research in concept, instrumentation, methods, and/or applications, including: mass spectrometry, spectroscopy, and electroanalysis; advanced separations; analytical strategies in “-omics” and imaging, bioanalysis, and sampling; miniaturized devices, medical diagnostics, sensors; analytical characterization of nano- and biomaterials; chemometrics and advanced data analysis.
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