基于Olink蛋白质组学探索导致肺腺癌进展的免疫肿瘤相关生物标记物

IF 3.6 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS
Shiwen Yu, Liangwei Yang, Jianfeng Shu, Tian Zhao, Liyuan Han, Ting Cai* and Guofang Zhao*, 
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引用次数: 0

摘要

引言研究导致肺癌恶化的不同蛋白质至关重要。材料与方法:我们利用 Olink 蛋白组学分析了 96 对肺腺癌组织样本中 92 种免疫肿瘤相关蛋白的表达水平。采用非参数秩和检验对肿瘤组和癌旁组、早期组和中晚期组的差异表达蛋白(DEPs)进行筛选,并通过火山图、热图等方法确定DEPs的分布和表达水平,计算曲线下面积。结果在肿瘤组织和癌旁组织的比较中,共发现了24种DEPs。其中,白细胞介素-8(IL8)和趋化因子(C-C 矩阵)配体 20(CCL20)是区分肿瘤组织的潜在标记物。通过进一步筛选发现,白细胞介素-6(IL6)和血管内皮生长因子 A(VEGFA)可能会通过 JaK-STAT 信号通路、Toll 样受体信号通路和 PI3K/AKT 信号通路导致肿瘤进展。有趣的是,我们的研究发现,与癌旁组织相比,肿瘤组织中的 IL6 和 VEGFA 下调。结论IL8 + CCL20(AUC:0.7056)具有区分肿瘤组织和癌旁组织的潜力;IL6 + VEGFA(AUC:0.7531)是重要的蛋白质标记物,可能是肿瘤进展的原因。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Olink Proteomics-Based Exploration of Immuno-Oncology-Related Biomarkers Leading to Lung Adenocarcinoma Progression

Olink Proteomics-Based Exploration of Immuno-Oncology-Related Biomarkers Leading to Lung Adenocarcinoma Progression

Introduction: It is crucial to investigate the distinct proteins that contribute to the advancement of lung cancer. Material and Methods: We analyzed the expression levels of 92 immuno-oncology-related proteins in 96 pairs of lung adenocarcinoma tissue samples using Olink proteomics. The differentially expressed proteins (DEPs) were successively screened in tumor and paraneoplastic groups, early and intermediate-late groups by a nonparametric rank sum test, and the distribution and expression levels of DEPs were determined by volcano and heat maps, etc., and the area under the curve was calculated. Results: A total of 24 DEPs were identified in comparisons between tumor and paracancerous tissues. Among them, interleukin-8 (IL8) and chemokine (C–C motif) ligand 20 (CCL20) as potential markers for distinguishing tumor tissues. Through further screening, it was found that interleukin-6 (IL6) and vascular endothelial growth factor A (VEGFA) may be able to lead to tumor progression through the JaK-STAT signaling pathway, Toll-like receptor signaling pathway and PI3K/AKT signaling pathway. Interestingly, our study revealed a down-regulation of IL6 and VEGFA in tumor tissues compared to paracancerous tissues. Conclusions: IL8 + CCL20 (AUC: 0.7056) have the potential to differentiate tumor tissue from paracancerous tissue; IL6 + VEGFA (AUC: 0.7531) are important protein markers potentially responsible for tumor progression.

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来源期刊
Journal of Proteome Research
Journal of Proteome Research 生物-生化研究方法
CiteScore
9.00
自引率
4.50%
发文量
251
审稿时长
3 months
期刊介绍: Journal of Proteome Research publishes content encompassing all aspects of global protein analysis and function, including the dynamic aspects of genomics, spatio-temporal proteomics, metabonomics and metabolomics, clinical and agricultural proteomics, as well as advances in methodology including bioinformatics. The theme and emphasis is on a multidisciplinary approach to the life sciences through the synergy between the different types of "omics".
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