通过整合发光生物传感器和数学建模量化植物信号通路

Biosensors Pub Date : 2024-08-05 DOI:10.3390/bios14080378
Shakeel Ahmed, Syed Muhammad Zaigham Abbas Naqvi, Fida Hussain, Muhammad Awais, Yongzhe Ren, Junfeng Wu, Hao Zhang, Yiheng Zang, Jiandong Hu
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引用次数: 0

摘要

植物进化出了复杂的信号通路,这些通路作为受反馈控制的网络运行,以应对压力因素。然而,这些途径背后的复杂分子机制仍有待理解,而实验验证也带来了巨大的挑战和费用。因此,计算假说评估在理解植物信号传递动力学方面变得越来越重要。生物传感器经过基因改造,在暴露于特定激素(如脱落酸(ABA))时会发光,从而实现量化。我们开发了计算模型,利用希尔方程和常微分方程(ODEs)模拟 ABA 浓度与生物发光传感器之间的关系,有助于更好地提出有关植物信号传递的假设。根据模拟结果,在指定的参数和模型假设条件下,1.5 μmol 浓度的发光强度为 47.646 RLUs。这种方法增强了我们对细胞水平植物信号通路的了解,以经济高效的方式为科学界带来了巨大收益。这些计算预测与实验结果的吻合强调了我们的方法的稳健性,为通过经验验证数学模型提供了一种经济有效的方法。该研究旨在将生物传感器的生物发光与植物信号传导及其数学模型相关联,以量化检测特定的植物激素 ABA。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Quantifying Plant Signaling Pathways by Integrating Luminescence-Based Biosensors and Mathematical Modeling
Plants have evolved intricate signaling pathways, which operate as networks governed by feedback to deal with stressors. Nevertheless, the sophisticated molecular mechanisms underlying these routes still need to be comprehended, and experimental validation poses significant challenges and expenses. Consequently, computational hypothesis evaluation gains prominence in understanding plant signaling dynamics. Biosensors are genetically modified to emit light when exposed to a particular hormone, such as abscisic acid (ABA), enabling quantification. We developed computational models to simulate the relationship between ABA concentrations and bioluminescent sensors utilizing the Hill equation and ordinary differential equations (ODEs), aiding better hypothesis development regarding plant signaling. Based on simulation results, the luminescence intensity was recorded for a concentration of 47.646 RLUs for 1.5 μmol, given the specified parameters and model assumptions. This method enhances our understanding of plant signaling pathways at the cellular level, offering significant benefits to the scientific community in a cost-effective manner. The alignment of these computational predictions with experimental results emphasizes the robustness of our approach, providing a cost-effective means to validate mathematical models empirically. The research intended to correlate the bioluminescence of biosensors with plant signaling and its mathematical models for quantified detection of specific plant hormone ABA.
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