编目遗传响应:通过转录组学揭示油茶山茶(Camellia oleifera Abel.)

Life Pub Date : 2024-08-08 DOI:10.3390/life14080989
Zhen Zhang, Yanming Xu, Caixia Liu, Longsheng Chen, Ying Zhang, Zhilong He, Rui Wang, Chengfeng Xun, Yushen Ma, Xiaokang Yuan, Xiang-nan Wang, Yongzhong Chen, Xiaohu Yang
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引用次数: 0

摘要

干旱胁迫是严重影响植物生长和生产力的关键环境因素。然而,关于油茶(Camellia oleifera Abel.)在干旱胁迫下差异表达基因的转录组分析尚不清楚。本研究分析了油茶在干旱处理下的转录组测序数据。在干旱胁迫下,共鉴定出20674个差异表达基因(DEGs),DEGs的数量随干旱持续时间的延长而增加。具体而言,干旱处理 8 天和 15 天后分别检测到 11,793 和 18,046 个 DEGs,其中包括大量上调和下调基因。基因本体(GO)富集分析表明,这些 DEGs 主要参与各种生物过程。京都基因组百科全书(KEGG)通路富集分析表明,碳代谢、乙醛酸和二羧酸代谢、蛋白酶体、甘氨酸、丝氨酸和苏氨酸代谢是主要的受影响通路。在 DEGs 中,发现了 376 个蛋白激酶、42 个蛋白酶、168 个转录因子(TF)基因和 152 个其他潜在功能基因,它们可能在油橄榄的干旱响应中发挥重要作用。利用实时定量 PCR(qRT-PCR)进一步验证了相关功能基因的表达。这些发现有助于理解油菜的抗旱机制,并为分子育种目的鉴定抗旱基因提供支持。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Cataloging the Genetic Response: Unveiling Drought-Responsive Gene Expression in Oil Tea Camellia (Camellia oleifera Abel.) through Transcriptomics
Drought stress is a critical environmental factor that significantly impacts plant growth and productivity. However, the transcriptome analysis of differentially expressed genes in response to drought stress in Camellia oleifera Abel. is still unclear. This study analyzed the transcriptome sequencing data of C. oleifera under drought treatments. A total of 20,674 differentially expressed genes (DEGs) were identified under drought stress, with the number of DEGs increasing with the duration of drought. Specifically, 11,793 and 18,046 DEGs were detected after 8 and 15 days of drought treatment, respectively, including numerous upregulated and downregulated genes. Gene Ontology (GO) enrichment analysis showed that the DEGs were primarily involved in various biological processes. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis revealed that carbon metabolism, glyoxylate and dicarboxylate metabolism, proteasome, glycine, serine, and threonine metabolism were the main affected pathways. Among the DEGs, 376 protein kinases, 42 proteases, 168 transcription factor (TF) genes, and 152 other potential functional genes were identified, which may play significant roles in the drought response of C. oleifera. The expression of relevant functional genes was further validated using quantitative real-time PCR (qRT-PCR). These findings contribute to the comprehension of drought tolerance mechanisms in C. oleifera and bolster the identification of drought-resistant genes for molecular breeding purposes.
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