根据基因组大小预测极地海洋中硅藻的丰度。

IF 9.8 1区 生物学 Q1 Agricultural and Biological Sciences
PLoS Biology Pub Date : 2024-08-08 eCollection Date: 2024-08-01 DOI:10.1371/journal.pbio.3002733
Wade R Roberts, Adam M Siepielski, Andrew J Alverson
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引用次数: 0

摘要

生态学的一个主要目标是确定自然界中物种丰度的决定因素。体型是丰度的一个基本且可重复的预测因素,体型较小的生物比体型较大的生物出现得更多。生物地理学的一个组成部分,即 "伯格曼法则"(Bergmann's rule),描述了在不同的分类群中,身体较大的生物在寒冷地区的优势。虽然体型的重要性毋庸置疑,但体型在多大程度上是这些模式的关键特征还不清楚。我们在硅藻中探讨了这些问题,硅藻是一种单细胞藻类,在海洋食物网的碳固定和能量流动中发挥着重要作用,在全球具有重要意义。利用分布于全球的一个单系的系统发生组数据集,我们发现体型(细胞体积)与基因组大小密切相关,而基因组大小在不同物种间的差异达 50 倍,其驱动因素是重复 DNA 数量的差异。然而,定向模型发现,对最大种群增长率影响最大的是温度和基因组大小,而不是细胞大小。全球代谢条码数据集进一步发现,基因组大小是预测海洋物种丰度的重要因素,但只有在高纬度和低纬度的寒冷地区,基因组大的硅藻才占主导地位,这种模式符合伯格曼法则。虽然物种丰度是由无数相互影响的非生物和生物因素决定的,但基因组大小本身对丰度的预测作用却非常强。综上所述,这些结果凸显了基因组大小这一生物体最基本、最不可还原的特性之一的出现性状的宏观进化变化对细胞和生态产生的连锁后果。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Diatom abundance in the polar oceans is predicted by genome size.

A principal goal in ecology is to identify the determinants of species abundances in nature. Body size has emerged as a fundamental and repeatable predictor of abundance, with smaller organisms occurring in greater numbers than larger ones. A biogeographic component, known as Bergmann's rule, describes the preponderance, across taxonomic groups, of larger-bodied organisms in colder areas. Although undeniably important, the extent to which body size is the key trait underlying these patterns is unclear. We explored these questions in diatoms, unicellular algae of global importance for their roles in carbon fixation and energy flow through marine food webs. Using a phylogenomic dataset from a single lineage with worldwide distribution, we found that body size (cell volume) was strongly correlated with genome size, which varied by 50-fold across species and was driven by differences in the amount of repetitive DNA. However, directional models identified temperature and genome size, not cell size, as having the greatest influence on maximum population growth rate. A global metabarcoding dataset further identified genome size as a strong predictor of species abundance in the ocean, but only in colder regions at high and low latitudes where diatoms with large genomes dominated, a pattern consistent with Bergmann's rule. Although species abundances are shaped by myriad interacting abiotic and biotic factors, genome size alone was a remarkably strong predictor of abundance. Taken together, these results highlight the cascading cellular and ecological consequences of macroevolutionary changes in an emergent trait, genome size, one of the most fundamental and irreducible properties of an organism.

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来源期刊
PLoS Biology
PLoS Biology BIOCHEMISTRY & MOLECULAR BIOLOGY-BIOLOGY
CiteScore
15.40
自引率
2.00%
发文量
359
审稿时长
3-8 weeks
期刊介绍: PLOS Biology is the flagship journal of the Public Library of Science (PLOS) and focuses on publishing groundbreaking and relevant research in all areas of biological science. The journal features works at various scales, ranging from molecules to ecosystems, and also encourages interdisciplinary studies. PLOS Biology publishes articles that demonstrate exceptional significance, originality, and relevance, with a high standard of scientific rigor in methodology, reporting, and conclusions. The journal aims to advance science and serve the research community by transforming research communication to align with the research process. It offers evolving article types and policies that empower authors to share the complete story behind their scientific findings with a diverse global audience of researchers, educators, policymakers, patient advocacy groups, and the general public. PLOS Biology, along with other PLOS journals, is widely indexed by major services such as Crossref, Dimensions, DOAJ, Google Scholar, PubMed, PubMed Central, Scopus, and Web of Science. Additionally, PLOS Biology is indexed by various other services including AGRICOLA, Biological Abstracts, BIOSYS Previews, CABI CAB Abstracts, CABI Global Health, CAPES, CAS, CNKI, Embase, Journal Guide, MEDLINE, and Zoological Record, ensuring that the research content is easily accessible and discoverable by a wide range of audiences.
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