{"title":"物理信息神经网络引导的 mAb 生产工艺建模和多目标优化","authors":"Md Nasre Alam, Anurag Anurag, Neelesh Gangwar, Manojkumar Ramteke, Hariprasad Kodamana, Anurag S. Rathore","doi":"10.1002/cjce.25446","DOIUrl":null,"url":null,"abstract":"In this paper, we aim to correlate various process and product quality attributes of a mammalian cell culture process with process parameters. To achieve this, we employed physics‐informed neural networks that solve the governing ordinary differential equations comprising independent variables (inputs‐ time, flow rates, and volume) and dependent variables (outputs‐ viable cell density, dead cell density, glucose concentration, lactate concentration, and monoclonal antibody concentration). The proposed model surpasses the prediction and accuracy capabilities of other commonly used modelling approaches, such as the multilayer perceptron model. It has higher <jats:italic>R</jats:italic>‐squared (<jats:italic>R</jats:italic><jats:sup>2</jats:sup>), lower root mean square error, and lower mean absolute error than the multilayer perceptron model for all output variables (viable cell density, viability, glucose concentration, lactate concentration, and monoclonal antibody concentration). Furthermore, we incorporate a Bayesian optimization study to maximize viable cell density and monoclonal antibody concentration. Single objective optimization and weighted sum multiobjective optimization were carried out for viable cell density and monoclonal antibody concentration in separate (single objective optimization) and combined (multiobjective optimization) forms. An increment of 13.01% and 18.57% for viable cell density and monoclonal antibody concentration, respectively, were projected under single objective optimization, and 46.32% and 67.86%, respectively, for multiobjective optimization as compared to the base case. This study highlights the potential of the physics‐informed neural networks‐based modelling and optimization of upstream processing of mammalian cell‐based monoclonal antibodies in biopharmaceutical operations.","PeriodicalId":501204,"journal":{"name":"The Canadian Journal of Chemical Engineering","volume":"8 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-08-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Physics‐informed neural networks guided modelling and multiobjective optimization of a mAb production process\",\"authors\":\"Md Nasre Alam, Anurag Anurag, Neelesh Gangwar, Manojkumar Ramteke, Hariprasad Kodamana, Anurag S. Rathore\",\"doi\":\"10.1002/cjce.25446\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"In this paper, we aim to correlate various process and product quality attributes of a mammalian cell culture process with process parameters. To achieve this, we employed physics‐informed neural networks that solve the governing ordinary differential equations comprising independent variables (inputs‐ time, flow rates, and volume) and dependent variables (outputs‐ viable cell density, dead cell density, glucose concentration, lactate concentration, and monoclonal antibody concentration). The proposed model surpasses the prediction and accuracy capabilities of other commonly used modelling approaches, such as the multilayer perceptron model. It has higher <jats:italic>R</jats:italic>‐squared (<jats:italic>R</jats:italic><jats:sup>2</jats:sup>), lower root mean square error, and lower mean absolute error than the multilayer perceptron model for all output variables (viable cell density, viability, glucose concentration, lactate concentration, and monoclonal antibody concentration). Furthermore, we incorporate a Bayesian optimization study to maximize viable cell density and monoclonal antibody concentration. Single objective optimization and weighted sum multiobjective optimization were carried out for viable cell density and monoclonal antibody concentration in separate (single objective optimization) and combined (multiobjective optimization) forms. An increment of 13.01% and 18.57% for viable cell density and monoclonal antibody concentration, respectively, were projected under single objective optimization, and 46.32% and 67.86%, respectively, for multiobjective optimization as compared to the base case. This study highlights the potential of the physics‐informed neural networks‐based modelling and optimization of upstream processing of mammalian cell‐based monoclonal antibodies in biopharmaceutical operations.\",\"PeriodicalId\":501204,\"journal\":{\"name\":\"The Canadian Journal of Chemical Engineering\",\"volume\":\"8 1\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-08-02\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"The Canadian Journal of Chemical Engineering\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1002/cjce.25446\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"The Canadian Journal of Chemical Engineering","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1002/cjce.25446","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
摘要
本文旨在将哺乳动物细胞培养过程的各种过程和产品质量属性与过程参数联系起来。为此,我们采用了物理信息神经网络来求解由自变量(输入--时间、流速和体积)和因变量(输出--存活细胞密度、死亡细胞密度、葡萄糖浓度、乳酸浓度和单克隆抗体浓度)组成的常微分方程。所提出的模型在预测能力和准确性方面超过了其他常用的建模方法,如多层感知器模型。就所有输出变量(存活细胞密度、存活率、葡萄糖浓度、乳酸浓度和单克隆抗体浓度)而言,它比多层感知器模型具有更高的 R 平方(R2)、更低的均方根误差和更低的平均绝对误差。此外,我们还进行了贝叶斯优化研究,以最大限度地提高存活细胞密度和单克隆抗体浓度。我们以单独(单目标优化)和组合(多目标优化)的形式对存活细胞密度和单克隆抗体浓度进行了单目标优化和加权和多目标优化。与基本情况相比,单目标优化预测的存活细胞密度和单克隆抗体浓度分别增加了 13.01% 和 18.57%,多目标优化预测的存活细胞密度和单克隆抗体浓度分别增加了 46.32% 和 67.86%。这项研究凸显了基于物理信息神经网络的建模和优化哺乳动物细胞单克隆抗体上游处理在生物制药操作中的潜力。
Physics‐informed neural networks guided modelling and multiobjective optimization of a mAb production process
In this paper, we aim to correlate various process and product quality attributes of a mammalian cell culture process with process parameters. To achieve this, we employed physics‐informed neural networks that solve the governing ordinary differential equations comprising independent variables (inputs‐ time, flow rates, and volume) and dependent variables (outputs‐ viable cell density, dead cell density, glucose concentration, lactate concentration, and monoclonal antibody concentration). The proposed model surpasses the prediction and accuracy capabilities of other commonly used modelling approaches, such as the multilayer perceptron model. It has higher R‐squared (R2), lower root mean square error, and lower mean absolute error than the multilayer perceptron model for all output variables (viable cell density, viability, glucose concentration, lactate concentration, and monoclonal antibody concentration). Furthermore, we incorporate a Bayesian optimization study to maximize viable cell density and monoclonal antibody concentration. Single objective optimization and weighted sum multiobjective optimization were carried out for viable cell density and monoclonal antibody concentration in separate (single objective optimization) and combined (multiobjective optimization) forms. An increment of 13.01% and 18.57% for viable cell density and monoclonal antibody concentration, respectively, were projected under single objective optimization, and 46.32% and 67.86%, respectively, for multiobjective optimization as compared to the base case. This study highlights the potential of the physics‐informed neural networks‐based modelling and optimization of upstream processing of mammalian cell‐based monoclonal antibodies in biopharmaceutical operations.