参与冠状动脉疾病和肺动脉高压的共同致病靶基因 CNTN1 具有诊断冠状动脉疾病的潜力。

IF 1.4 4区 医学 Q3 CARDIAC & CARDIOVASCULAR SYSTEMS
Kun Cheng, Qixuan Zhai, Jieqiong Song, Bing Liu
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引用次数: 0

摘要

背景:我们的目的是通过检测涉及冠状动脉疾病(CAD)和肺动脉高压(PAH)的共同致病靶基因,找到冠状动脉疾病(CAD)早期诊断的基因:数据集来自基因表达总库(GEO)数据库,包括GSE113079、GSE113439和GSE12288,研究心血管疾病的基因表达模式。加权基因共表达网络分析(WGCNA)用于识别与临床特征相关的基因模块。进行了差异基因表达分析和功能富集分析。构建了蛋白质-蛋白质相互作用(PPI)网络。利用 JASPAR 数据库和 FIMO 工具预测转录因子(TF)结合位点:结果:在 CAD 和 PAH 中发现了 15 个关键基因,其中 CNTN1 因其高度关联性而被优先考虑作进一步研究。上游调控分析发现了潜在的 TFs(DRGX、HOXD3 和 RAX)和 7 个靶向 CNTN1 的 miRNA。在 CAD 样本中,CNTN1 的表达谱明显上调,ROC 分析表明其对 CAD 具有潜在的诊断价值。CMap 数据库分析预测了治疗 CAD 的潜在靶向药物:CNTN1被检测出是CAD和PAH的共同致病基因。它在 CAD 患者中高表达,具有诊断 CAD 的潜在价值。CNTN1 可能受 3 个 TFs 和 7 个 miRNAs 的调控。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
The Co-pathogenic Target Gene CNTN1 Involved in Coronary Artery Disease and Pulmonary Arterial Hypertension Has Potential for Diagnosis of Coronary Artery Disease.

Background: We aimed to find a gene for coronary artery disease (CAD) early diagnosis by detecting co-pathogenic target gene involved in CAD and pulmonary arterial hypertension (PAH). Methods: Datasets were obtained from the Gene Expression Omnibus (GEO) database, including GSE113079, GSE113439, and GSE12288, to investigate gene expression patterns in cardiovascular diseases. Weighted Gene Co-expression Network Analysis (WGCNA) was performed to identify gene modules associated with clinical traits. Differential gene expression analysis and functional enrichment analysis were carried out. Protein-protein interaction (PPI) networks were constructed. JASPAR database and FIMO tool were utilized to predict transcription factor (TF) binding sites. Results: Fifteen key genes were identified in CAD and PAH, with CNTN1 being prioritized for further investigation due to its high connectivity degree. Upstream regulation analysis identified potential TFs (DRGX, HOXD3, and RAX) and 7 miRNAs targeting CNTN1. The expression profile of CNTN1 was significantly upregulated in CAD samples, and ROC analysis indicated potential diagnostic value for CAD. CMap database analysis predicted potential targeted drugs for CAD. Conclusion: CNTN1 was detected as a co-pathogenetic gene for CAD and PAH. It is highly expressed in CAD patients and has potential value for CAD diagnosis. CNTN1 is potentially regulated by 3 TFs and 7 miRNAs.

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来源期刊
Anatolian Journal of Cardiology
Anatolian Journal of Cardiology CARDIAC & CARDIOVASCULAR SYSTEMS-
CiteScore
2.30
自引率
7.70%
发文量
270
审稿时长
12 weeks
期刊介绍: The Anatolian Journal of Cardiology is an international monthly periodical on cardiology published on independent, unbiased, double-blinded and peer-review principles. The journal’s publication language is English. The Anatolian Journal of Cardiology aims to publish qualified and original clinical, experimental and basic research on cardiology at the international level. The journal’s scope also covers editorial comments, reviews of innovations in medical education and practice, case reports, original images, scientific letters, educational articles, letters to the editor, articles on publication ethics, diagnostic puzzles, and issues in social cardiology. The target readership includes academic members, specialists, residents, and general practitioners working in the fields of adult cardiology, pediatric cardiology, cardiovascular surgery and internal medicine.
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