利用 GutHi-C 高效、易用地捕捉三维元基因组相互作用

IF 23.7 Q1 MICROBIOLOGY
iMeta Pub Date : 2024-07-22 DOI:10.1002/imt2.227
Yu-Xi Lu, Jin-Bao Yang, Chen-Ying Li, Yun-Han Tian, Rong-Rong Chang, Da-Shuai Kong, Shu-Lin Yang, Yan-Fang Wang, Yu-Bo Zhang, Xiu-Sheng Zhu, Wei-Hua Pan, Si-Yuan Kong
{"title":"利用 GutHi-C 高效、易用地捕捉三维元基因组相互作用","authors":"Yu-Xi Lu,&nbsp;Jin-Bao Yang,&nbsp;Chen-Ying Li,&nbsp;Yun-Han Tian,&nbsp;Rong-Rong Chang,&nbsp;Da-Shuai Kong,&nbsp;Shu-Lin Yang,&nbsp;Yan-Fang Wang,&nbsp;Yu-Bo Zhang,&nbsp;Xiu-Sheng Zhu,&nbsp;Wei-Hua Pan,&nbsp;Si-Yuan Kong","doi":"10.1002/imt2.227","DOIUrl":null,"url":null,"abstract":"<p>Hi-C can obtain three-dimensional chromatin structure information and is widely used for genome assembly. We constructed the GutHi-C technology. As shown in the graphical abstract, it is a highly efficient and quick-to-operate method and can be widely used for human, livestock, and poultry gut microorganisms. It provides a reference for the Hi-C methodology of the microbial metagenome. DPBS, Dulbecco's phosphate-buffered saline; Hi-C, high-through chromatin conformation capture; LB, Luria-Bertani; NGS, next-generation sequencing; PCR, polymerase chain reaction; QC, quality control.\n <figure>\n <div><picture>\n <source></source></picture><p></p>\n </div>\n </figure></p>","PeriodicalId":73342,"journal":{"name":"iMeta","volume":"3 5","pages":""},"PeriodicalIF":23.7000,"publicationDate":"2024-07-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/imt2.227","citationCount":"0","resultStr":"{\"title\":\"Efficient and easy-to-use capturing three-dimensional metagenome interactions with GutHi-C\",\"authors\":\"Yu-Xi Lu,&nbsp;Jin-Bao Yang,&nbsp;Chen-Ying Li,&nbsp;Yun-Han Tian,&nbsp;Rong-Rong Chang,&nbsp;Da-Shuai Kong,&nbsp;Shu-Lin Yang,&nbsp;Yan-Fang Wang,&nbsp;Yu-Bo Zhang,&nbsp;Xiu-Sheng Zhu,&nbsp;Wei-Hua Pan,&nbsp;Si-Yuan Kong\",\"doi\":\"10.1002/imt2.227\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>Hi-C can obtain three-dimensional chromatin structure information and is widely used for genome assembly. We constructed the GutHi-C technology. As shown in the graphical abstract, it is a highly efficient and quick-to-operate method and can be widely used for human, livestock, and poultry gut microorganisms. It provides a reference for the Hi-C methodology of the microbial metagenome. DPBS, Dulbecco's phosphate-buffered saline; Hi-C, high-through chromatin conformation capture; LB, Luria-Bertani; NGS, next-generation sequencing; PCR, polymerase chain reaction; QC, quality control.\\n <figure>\\n <div><picture>\\n <source></source></picture><p></p>\\n </div>\\n </figure></p>\",\"PeriodicalId\":73342,\"journal\":{\"name\":\"iMeta\",\"volume\":\"3 5\",\"pages\":\"\"},\"PeriodicalIF\":23.7000,\"publicationDate\":\"2024-07-22\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://onlinelibrary.wiley.com/doi/epdf/10.1002/imt2.227\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"iMeta\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://onlinelibrary.wiley.com/doi/10.1002/imt2.227\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"iMeta","FirstCategoryId":"1085","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1002/imt2.227","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"MICROBIOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

Hi-C 可以获得三维染色质结构信息,被广泛应用于基因组组装。我们构建了 GutHi-C 技术。如图表摘要所示,它是一种高效、可快速操作的方法,可广泛应用于人类、家畜和家禽肠道微生物。它为微生物元基因组的 Hi-C 方法提供了参考。DPBS,杜氏磷酸盐缓冲盐水;Hi-C,高通量染色质构象捕获;LB,Luria-Bertani;NGS,新一代测序;PCR,聚合酶链反应;QC,质量控制。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Efficient and easy-to-use capturing three-dimensional metagenome interactions with GutHi-C

Efficient and easy-to-use capturing three-dimensional metagenome interactions with GutHi-C

Hi-C can obtain three-dimensional chromatin structure information and is widely used for genome assembly. We constructed the GutHi-C technology. As shown in the graphical abstract, it is a highly efficient and quick-to-operate method and can be widely used for human, livestock, and poultry gut microorganisms. It provides a reference for the Hi-C methodology of the microbial metagenome. DPBS, Dulbecco's phosphate-buffered saline; Hi-C, high-through chromatin conformation capture; LB, Luria-Bertani; NGS, next-generation sequencing; PCR, polymerase chain reaction; QC, quality control.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
10.80
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信