基于高通量测序技术的切口疝转录组分析。

IF 4.6 Q2 MATERIALS SCIENCE, BIOMATERIALS
ACS Applied Bio Materials Pub Date : 2024-10-01 Epub Date: 2024-07-29 DOI:10.1007/s10029-024-03116-7
Yiming Lin, Hekai Shi, Rongduo Yang, Shaochun Li, Jianxiong Tang, Shaojie Li
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引用次数: 0

摘要

目的:切口疝是一种常见的术后并发症,但有关它的转录组学研究却很少。在这项研究中,我们利用第二代高通量测序技术探索切口疝的发病机制和潜在治疗靶点:方法:从 15 名无疝气患者和 21 名切口疝患者身上采集浅筋膜。对筋膜进行高通量测序,生成表达矩阵。我们对矩阵进行了分析,以确定差异表达基因(DEGs),并对这些 DEGs 进行了基因本体和富集分析。此外,我们还利用外部数据集来确定关键的 DEGs:结果:我们发现了 1823 个与细胞外基质(ECM)失衡、细菌炎症反应和纤维胶原三聚化密切相关的 DEGs。TNNT3、CMAY5、ATP1B4、ASB5、CILP、SIX4、FBN1和FNDC5被确定为两种表达矩阵交叉处的关键DEGs。此外,非酒精性脂肪肝相关、TNF和IL-17信号通路也被确定为关键富集通路:结论:我们发现了与切口疝相关的八个关键 DEGs 和三个通路。结论:我们发现了与切口疝相关的八个关键 DEGs 和三个通路。我们的发现为切口疝的发病机制提供了新的见解,并突出了预防和治疗切口疝的潜在靶点。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

A transcriptomic analysis of incisional hernia based on high-throughput sequencing technology.

A transcriptomic analysis of incisional hernia based on high-throughput sequencing technology.

Purpose: Incisional hernia is a common postoperative complication; however, few transcriptomic studies have been conducted on it. In this study, we used second-generation high-throughput sequencing to explore the pathogenesis and potential therapeutic targets of incisional hernias.

Methods: Superficial fasciae were collected from 15 patients without hernia and 21 patients with an incisional hernia. High-throughput sequencing of the fascia was performed to generate an expression matrix. We analyzed the matrix to identify differentially expressed genes (DEGs) and performed gene ontology and enrichment analyses of these DEGs. Additionally, an external dataset was utilized to identify key DEGs.

Results: We identified 1,823 DEGs closely associated with extracellular matrix (ECM) imbalance, bacterial inflammatory response, and fibrillar collagen trimerization. TNNT3, CMAY5, ATP1B4, ASB5, CILP, SIX4, FBN1 and FNDC5 were identified as key DEGs at the intersection of the two expression matrices. Moreover, non-alcoholic fatty liver disease-related, TNF, and IL-17 signaling pathways were identified as key enrichment pathways.

Conclusions: We identified eight key DEGs and three pathways associated with incisional hernias. Our findings offer new insights into the pathogenesis of incisional hernias and highlight potential targets for their prevention and treatment.

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来源期刊
ACS Applied Bio Materials
ACS Applied Bio Materials Chemistry-Chemistry (all)
CiteScore
9.40
自引率
2.10%
发文量
464
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