{"title":"利用重组枯草芽孢杆菌漆酶生物降解苯并芘分子,有望用于染料污染环境","authors":"Bahareh Sargazi, Aliakbar Haddad-Mashadrizeh, Mansoor Mashreghi, Nematollah Razmi","doi":"10.1007/s40995-024-01676-y","DOIUrl":null,"url":null,"abstract":"<div><p>Environmental remediation through biological methods is one of the main concerns of nations today. Benzopyrene (BP) is the main component of polycyclic aromatic hydrocarbons, and has been frequently found in the air, surface water, soil, and sediments. BP is resistant to remediation because of their low water solubility. Laccases are one of the best materials that could be employed for degradation of BP. Bacterial laccases are a high thermostable enzyme that can endure a vast range of pH; however, due to their low redox potential and activity, they have not been studied thoroughly. In this work, site specific mutation at a site near the Cu1, which is the primary electron acceptor in laccase-catalyzed oxidation, was applied to a laccase from <i>Bacillus subtilis</i> to increase laccase activity. The mutated gene cotA laccase was cloned in pET22b(+) plasmid and transformed in expression host <i>Escherichia coli</i> BL21 (DE3). The recombinant protein was produced under optimum induction (37 °C), purified and then analyzed through SDS-PAGE method. Enzyme activity was analyzed by specific laccase substrate (ABTS). further analysis was done for enzyme properties in different temperature, pH, and salt concentration. The results showed that the recombinant enzyme had a higher activity than native enzyme in the same condition. Determining biological degradation characteristics of BP using the recombinant laccase indicated that the recombinant laccase was more stable in different conditions and had a high enzyme potential. The functionality assays of these enzymes imply that the mutant-type is more potent given its affinity with the benzo[a]pyrene as the corresponding ligand and ABTS oxidation as a substrate under the in-silico and in-vitro conditions respectively. Furthermore, the Km and Vmax of the purified enzymes were determined in line with their activities, so that the mutant-type revealed 54% decrease in Km and 5.5-fold increase in Kcat and an increase in Kcat/Km parameter. In addition, through HPLC technique, the comparison of BP degradation by the natural and mutant enzymes confirmed the superior capability of the mutant enzyme in BP removal.</p></div>","PeriodicalId":600,"journal":{"name":"Iranian Journal of Science and Technology, Transactions A: Science","volume":"48 5","pages":"1113 - 1123"},"PeriodicalIF":1.4000,"publicationDate":"2024-07-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Biodegradation of Benzopyrene Molecule Using a Recombinant Laccase from Bacillus Subtilis as a Promising Candidate for Dye-Contaminated Environment\",\"authors\":\"Bahareh Sargazi, Aliakbar Haddad-Mashadrizeh, Mansoor Mashreghi, Nematollah Razmi\",\"doi\":\"10.1007/s40995-024-01676-y\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>Environmental remediation through biological methods is one of the main concerns of nations today. Benzopyrene (BP) is the main component of polycyclic aromatic hydrocarbons, and has been frequently found in the air, surface water, soil, and sediments. BP is resistant to remediation because of their low water solubility. Laccases are one of the best materials that could be employed for degradation of BP. Bacterial laccases are a high thermostable enzyme that can endure a vast range of pH; however, due to their low redox potential and activity, they have not been studied thoroughly. In this work, site specific mutation at a site near the Cu1, which is the primary electron acceptor in laccase-catalyzed oxidation, was applied to a laccase from <i>Bacillus subtilis</i> to increase laccase activity. The mutated gene cotA laccase was cloned in pET22b(+) plasmid and transformed in expression host <i>Escherichia coli</i> BL21 (DE3). The recombinant protein was produced under optimum induction (37 °C), purified and then analyzed through SDS-PAGE method. Enzyme activity was analyzed by specific laccase substrate (ABTS). further analysis was done for enzyme properties in different temperature, pH, and salt concentration. The results showed that the recombinant enzyme had a higher activity than native enzyme in the same condition. Determining biological degradation characteristics of BP using the recombinant laccase indicated that the recombinant laccase was more stable in different conditions and had a high enzyme potential. The functionality assays of these enzymes imply that the mutant-type is more potent given its affinity with the benzo[a]pyrene as the corresponding ligand and ABTS oxidation as a substrate under the in-silico and in-vitro conditions respectively. Furthermore, the Km and Vmax of the purified enzymes were determined in line with their activities, so that the mutant-type revealed 54% decrease in Km and 5.5-fold increase in Kcat and an increase in Kcat/Km parameter. In addition, through HPLC technique, the comparison of BP degradation by the natural and mutant enzymes confirmed the superior capability of the mutant enzyme in BP removal.</p></div>\",\"PeriodicalId\":600,\"journal\":{\"name\":\"Iranian Journal of Science and Technology, Transactions A: Science\",\"volume\":\"48 5\",\"pages\":\"1113 - 1123\"},\"PeriodicalIF\":1.4000,\"publicationDate\":\"2024-07-24\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Iranian Journal of Science and Technology, Transactions A: Science\",\"FirstCategoryId\":\"4\",\"ListUrlMain\":\"https://link.springer.com/article/10.1007/s40995-024-01676-y\",\"RegionNum\":4,\"RegionCategory\":\"综合性期刊\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"MULTIDISCIPLINARY SCIENCES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Iranian Journal of Science and Technology, Transactions A: Science","FirstCategoryId":"4","ListUrlMain":"https://link.springer.com/article/10.1007/s40995-024-01676-y","RegionNum":4,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"MULTIDISCIPLINARY SCIENCES","Score":null,"Total":0}
引用次数: 0
摘要
通过生物方法修复环境是当今各国关注的主要问题之一。苯并芘(BP)是多环芳烃的主要成分,经常在空气、地表水、土壤和沉积物中发现。苯并芘的水溶性很低,因此难以修复。裂解酶是降解 BP 的最佳材料之一。细菌拉克酶是一种高热稳定性酶,可以承受很大的 pH 值范围;然而,由于其氧化还原电位和活性较低,对其的研究还不够深入。本研究对枯草芽孢杆菌的一种漆酶进行了位点特异性突变,以提高漆酶的活性,突变位点位于Cu1附近,而Cu1是漆酶催化氧化过程中的主要电子受体。将突变基因 cotA 漆酶克隆到 pET22b(+) 质粒中,并转化到表达宿主大肠杆菌 BL21 (DE3) 中。在最佳诱导条件下(37 °C)产生重组蛋白,纯化后通过 SDS-PAGE 方法进行分析。酶活性通过特定的漆酶底物(ABTS)进行分析。结果表明,在相同条件下,重组酶的活性高于原生酶。利用重组漆酶测定 BP 的生物降解特性表明,重组漆酶在不同条件下更加稳定,具有较高的酶潜能。对这些酶进行的功能测定表明,突变型漆酶的作用更强,因为它与作为相应配体的苯并[a]芘和作为底物的 ABTS 氧化物的亲和力分别在体内和体外条件下都很强。此外,还根据酶的活性测定了纯化酶的 Km 和 Vmax,结果表明突变型酶的 Km 降低了 54%,Kcat 增加了 5.5 倍,Kcat/Km 参数也有所增加。此外,通过高效液相色谱(HPLC)技术,比较了天然酶和突变型酶降解 BP 的情况,证实突变型酶去除 BP 的能力更强。
Biodegradation of Benzopyrene Molecule Using a Recombinant Laccase from Bacillus Subtilis as a Promising Candidate for Dye-Contaminated Environment
Environmental remediation through biological methods is one of the main concerns of nations today. Benzopyrene (BP) is the main component of polycyclic aromatic hydrocarbons, and has been frequently found in the air, surface water, soil, and sediments. BP is resistant to remediation because of their low water solubility. Laccases are one of the best materials that could be employed for degradation of BP. Bacterial laccases are a high thermostable enzyme that can endure a vast range of pH; however, due to their low redox potential and activity, they have not been studied thoroughly. In this work, site specific mutation at a site near the Cu1, which is the primary electron acceptor in laccase-catalyzed oxidation, was applied to a laccase from Bacillus subtilis to increase laccase activity. The mutated gene cotA laccase was cloned in pET22b(+) plasmid and transformed in expression host Escherichia coli BL21 (DE3). The recombinant protein was produced under optimum induction (37 °C), purified and then analyzed through SDS-PAGE method. Enzyme activity was analyzed by specific laccase substrate (ABTS). further analysis was done for enzyme properties in different temperature, pH, and salt concentration. The results showed that the recombinant enzyme had a higher activity than native enzyme in the same condition. Determining biological degradation characteristics of BP using the recombinant laccase indicated that the recombinant laccase was more stable in different conditions and had a high enzyme potential. The functionality assays of these enzymes imply that the mutant-type is more potent given its affinity with the benzo[a]pyrene as the corresponding ligand and ABTS oxidation as a substrate under the in-silico and in-vitro conditions respectively. Furthermore, the Km and Vmax of the purified enzymes were determined in line with their activities, so that the mutant-type revealed 54% decrease in Km and 5.5-fold increase in Kcat and an increase in Kcat/Km parameter. In addition, through HPLC technique, the comparison of BP degradation by the natural and mutant enzymes confirmed the superior capability of the mutant enzyme in BP removal.
期刊介绍:
The aim of this journal is to foster the growth of scientific research among Iranian scientists and to provide a medium which brings the fruits of their research to the attention of the world’s scientific community. The journal publishes original research findings – which may be theoretical, experimental or both - reviews, techniques, and comments spanning all subjects in the field of basic sciences, including Physics, Chemistry, Mathematics, Statistics, Biology and Earth Sciences