植物岩石形态测量中观察者之间和观察者内部的差异。

IF 3.6 2区 生物学 Q1 PLANT SCIENCES
Welmoed A Out, Rand Evett, Kristýna Hošková, Robert C Power, Javier Ruiz-Pérez, Monica Tromp, Luc Vrydaghs, Kali Wade, Mario Hasler
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引用次数: 0

摘要

背景:考古植物学家和古生态学家广泛使用几何形态计量学来识别植物蛋白石。特别是在应用于从封闭环境中采集的植物托叶集合体时,将考古植物托叶的形态计量数据与参考材料中的类似数据进行比较,可以确定分类归属。观察者的差异是植物残片形态测量中很少受到关注的一个方面,但它可能是误差的一个重要来源,因此可能导致植物残片的错误鉴定:为了研究植物岩石形态测量中观察者之间和观察者内部的差异,在国际植物岩石形态测量学委员会(ICPM)的支持下,来自不同实验室的八名研究人员(观察者)分别对双叶、牛形扇形和细长树枝状三种植物岩石形态类型的 50 个样本进行了三次测量:方法:通过人工将照片上的植物岩石轮廓(掩膜)数字化,然后使用开源形态测量软件对掩膜进行测量,收集每块植物岩石的 17 个尺寸和形状变量的数据:观察者之间的差异从 0% 到 23% 不等。观察者内部的差异从 0% 到 9% 不等。在缺乏经验的研究人员中,观察者之间和观察者内部的差异普遍较大:比例误差是造成差异的主要原因,而且在经验不足的研究人员中发生得更多,这可能与他们对数据收集的熟悉程度有关。结果表明,通过对设备、照片采集、软件、数据收集和数据清理进行明确说明和培训,可以大大减少观察者之间和观察者内部的差异。自动数据收集技术的进步可能最终会减少观察者之间和观察者内部的差异,但在这成为普遍做法之前,ICPM 建议植物岩石形态计量分析应遵守标准化准则,以确保不同研究人员和实验室测量的植物岩石变量准确、一致并具有可比性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Inter- and intra-observer variation in phytolith morphometry.

Background: Archaeobotanists and palaeoecologists use geometric morphometrics extensively to identify plant opal phytoliths. Particularly when applied to assemblages of phytoliths from concentrations retrieved from closed contexts, morphometric data from archaeological phytoliths compared with similar data from reference material can allow taxonomic attribution. Observer variation is one aspect of phytolith morphometry that has received little attention but might be an important source of error and a potential cause of misidentification of plant remains.

Scope: To investigate inter- and intra-observer variation in phytolith morphometry, eight researchers (observers) from different laboratories measured 50 samples each from three phytolith morphotypes (Bilobate, Bulliform flabellate and Elongate dendritic) three times, under the auspices of the International Committee for Phytolith Morphometrics (ICPM).

Methods: Data for 17 size and shape variables were collected for each phytolith by manually digitizing a phytolith outline (mask) from a photograph, followed by measurement of the mask with open-source morphometric software.

Key results: Inter-observer variation ranged from 0 to 23 % difference from the mean of all observers. Intra-observer variation ranged from 0 to 9 % difference from the mean of individual observers per week. Inter- and intra-observer variation was generally higher among inexperienced researchers.

Conclusions: Scaling errors were a major cause of variation and occurred more with less experienced researchers, which is likely to be related to familiarity with data collection. The results indicate that inter- and intra-observer variation can be reduced substantially by providing clear instructions for and training with the equipment, photograph capturing, software, data collection and data cleaning. In this paper, the ICPM provides recommendations to minimize variation. Advances in automatic data collection might eventually reduce inter- and intra-observer variation, but until this is common practice, the ICPM recommends that phytolith morphometric analyses adhere to standardized guidelines to assure that measured phytolith variables are accurate, consistent and comparable between different researchers and laboratories.

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来源期刊
Annals of botany
Annals of botany 生物-植物科学
CiteScore
7.90
自引率
4.80%
发文量
138
审稿时长
3 months
期刊介绍: Annals of Botany is an international plant science journal publishing novel and rigorous research in all areas of plant science. It is published monthly in both electronic and printed forms with at least two extra issues each year that focus on a particular theme in plant biology. The Journal is managed by the Annals of Botany Company, a not-for-profit educational charity established to promote plant science worldwide. The Journal publishes original research papers, invited and submitted review articles, ''Research in Context'' expanding on original work, ''Botanical Briefings'' as short overviews of important topics, and ''Viewpoints'' giving opinions. All papers in each issue are summarized briefly in Content Snapshots , there are topical news items in the Plant Cuttings section and Book Reviews . A rigorous review process ensures that readers are exposed to genuine and novel advances across a wide spectrum of botanical knowledge. All papers aim to advance knowledge and make a difference to our understanding of plant science.
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