直接估算分子系统中单个非共价相互作用能量的分子裁剪方法。

IF 2.8 2区 化学 Q3 CHEMISTRY, PHYSICAL
The Journal of Physical Chemistry A Pub Date : 2024-08-01 Epub Date: 2024-07-22 DOI:10.1021/acs.jpca.4c01176
Mini Bharati Ahirwar, Shridhar R Gadre, Milind M Deshmukh
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引用次数: 0

摘要

非共价相互作用(NCIs)在化学、物理学和生物学中无处不在。对这种相互作用的研究有助于深入了解各种物理化学现象。本视角第 1 部分简要回顾了文献中提出的一些探索非共价相互作用的间接方法。这些方法包括(i) 参与 X-Y-Z 相互作用的 X-Y 键伸展频率的移动。(ii) 分子电子密度的拓扑分析。(iii) 利用实验和理论量得出的经验方程。然而,文献中缺乏估算单个分子内/分子间相互作用能量的直接方法。我们开发了一种基于分子裁剪方法(MTA)的方法,能够直接可靠地估算分子内和分子间相互作用的能量。这种方法可以直接可靠地估算这些相互作用,特别是分子/弱结合团簇中的氢键(HB)以及各自的合作贡献。第 2 节讨论了我们方法的基础以及一些示例。第 3 节介绍了该方法在各种分子和团簇中的应用,特别强调了对 HB 能量和其他 NCI 能量的估算。第 4 节讨论了将我们的方法应用于大分子团簇的一些计算策略。最后一节是对未来发展的总结和讨论。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Molecular Tailoring Approach for the Direct Estimation of Individual Noncovalent Interaction Energies in Molecular Systems.

Molecular Tailoring Approach for the Direct Estimation of Individual Noncovalent Interaction Energies in Molecular Systems.

The noncovalent interactions (NCIs) are omnipresent in chemistry, physics, and biology. The study of such interactions offers insights into various physicochemical phenomena. Some indirect approaches proposed in the literature for exploring the NCIs are briefly reviewed in Section 1 of this Perspective. These include: (i) Shift in the stretching frequency of an X-Y bond involved in X-Y···Z interaction. (ii) Topological analysis of molecular electron density. (iii) Empirical equations derived employing experimental and theoretical quantities. However, a direct method for estimating individual intramolecular/intermolecular interaction energies has been conspicuous by its absence from the literature. We have developed a molecular tailoring approach (MTA)-based method enabling a direct and reliable estimation of the energy of intra- as well as intermolecular interactions. This method offers a direct and reliable estimation of these interactions, in particular of the hydrogen bonds (HB) in molecules/weakly bound clusters along with the respective cooperativity contribution. In Section 2, the basis of our method is discussed, along with some illustrative examples. The application of this method to a variety of molecules and clusters, with a special emphasis on estimating the HB energy along with the energy of other NCIs is presented in Section 3. Section 4 discusses some computational strategies for applying our method to large molecular clusters. The last Section provides a summary and a discussion on future developments.

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来源期刊
The Journal of Physical Chemistry A
The Journal of Physical Chemistry A 化学-物理:原子、分子和化学物理
CiteScore
5.20
自引率
10.30%
发文量
922
审稿时长
1.3 months
期刊介绍: The Journal of Physical Chemistry A is devoted to reporting new and original experimental and theoretical basic research of interest to physical chemists, biophysical chemists, and chemical physicists.
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