环糊精-类固醇复合物结合自由能的预测:相溶性和分子动力学研究

IF 2.3 4区 化学 Q2 Agricultural and Biological Sciences
Parisa Fereidounpour, Casper Steinmann, Kim Lambertsen Larsen
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引用次数: 0

摘要

类固醇激素作为化学信使在人体内发挥着至关重要的作用。然而,它们在水中的溶解度很低,而环糊精可以增加它们的溶解度,从而提高药物制剂的生物利用度。通过模拟预测环糊精/类固醇包合物结合自由能的准确性非常重要,因为它能以低成本预测环糊精/类固醇包合物在现实生活中的行为,并能为高通量筛选带来潜在价值。目前有许多计算方法,因此了解当前理论模型准确预测这些包合物结合自由能的能力非常重要。我们特别关注了四种类固醇包合物结合自由能的估算:通过相溶解度估算氢化可的松、地塞米松、泼尼松龙和 6α-甲基泼尼松龙与原生 α-CD、β-CD、γ-CD、(2-羟基)丙基-β-CD 和磺丁基醚-β-CD 的包合物结合自由能,并通过模拟估算与 α、β 和 γ-CD 的包合物结合自由能。模拟评估采用了对接法和分子力学结合广义玻恩和表面积(MM/GBSA)连续溶解法。从相溶解度图来看,(2-羟基)丙基-β-CD 和磺丁基醚-β-CD 在高浓度范围内溶解了更多的类固醇。根据相溶解度和理论得出的结合自由能评估结果表明,MM/GBSA 方法有望在计算类固醇/环糊精结合自由能领域可靠地得出准确的预测结果,相关系数 (R2) = 0.94。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Prediction of the free energy of binding for cyclodextrin-steroid complexes: phase solubility and molecular dynamics studies

Prediction of the free energy of binding for cyclodextrin-steroid complexes: phase solubility and molecular dynamics studies

Steroid hormones play a crucial role in the body by acting as chemical messengers. They are, however, poorly soluble in water, and cyclodextrins can increase their solubility thus leading to increased bioavailability when used in drug formulations. Accuracy in the prediction of the free energy of binding of cyclodextrin/steroid inclusion complexes with simulation is important because of the potential value it brings by providing low-cost predictions of the real-life behavior of the cyclodextrin/steroid inclusion complex and the potential for high-through-put screening. Many computational methods exist, and it is therefore important to understand the ability of current theoretical models to accurately predict the free energy of binding for these inclusion complexes. We focused specifically on the estimation of the free energy of binding of inclusion complexes of four steroids: Hydrocortisone, dexamethasone, prednisolone, and 6α-methylprednisolone with native α-CD, β-CD, γ-CD, (2-hydroxy)propyl-β-CD, and sulfobutylether-β-CD by phase solubility as well as with α, β, and γ-CD by simulations. The simulations were assessed with both docking and the molecular mechanics combined with the generalized Born and surface area (MM/GBSA) continuum solvation approach. Considering the phase solubility diagram, (2-hydroxy)propyl-β-CD and sulfobutylether-β-CD dissolved more steroids in the higher concentration range as expected. The assessment of the free energy of binding obtained from the phase solubility and theory showed that the MM/GBSA method has shown promise in reliably generating accurate predictions in the field of calculating the free energy of binding of steroids/cyclodextrins with a correlation coefficient (R2) = 0.94.

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来源期刊
CiteScore
3.30
自引率
8.70%
发文量
0
审稿时长
3-8 weeks
期刊介绍: The Journal of Inclusion Phenomena and Macrocyclic Chemistry is the premier interdisciplinary publication reporting on original research into all aspects of host-guest systems. Examples of specific areas of interest are: the preparation and characterization of new hosts and new host-guest systems, especially those involving macrocyclic ligands; crystallographic, spectroscopic, thermodynamic and theoretical studies; applications in chromatography and inclusion polymerization; enzyme modelling; molecular recognition and catalysis by inclusion compounds; intercalates in biological and non-biological systems, cyclodextrin complexes and their applications in the agriculture, flavoring, food and pharmaceutical industries; synthesis, characterization and applications of zeolites. The journal publishes primarily reports of original research and preliminary communications, provided the latter represent a significant advance in the understanding of inclusion science. Critical reviews dealing with recent advances in the field are a periodic feature of the journal.
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