{"title":"来自 Curcubita moschata、Curcubita maxima 和 Irvingia gabonensis 的植物化学物质的抗菌活性、PASS 预测和 ADME 分析:硅学研究的启示。","authors":"Misbaudeen Abdul-Hammed, Ibrahim Olaide Adedotun, Modinat Wuraola Akinboade, Timilehin Adekunle Adegboyega, Oladele Muheez Salaudeen","doi":"10.1007/s40203-024-00234-z","DOIUrl":null,"url":null,"abstract":"<p><p>Microbial infection management and treatment are crucial as a result of the prevalent antimicrobial resistance issue. Progressive studies are being carried out on how to develop drugs that can mitigate the resistance trends of these microorganisms. Secondary metabolites of plants can also be employed and accessed for this role, as the current study examines the antibacterial activities of phytochemicals from three (3) plants (<i>Cucubita moschata</i>, <i>Cucubita maxima</i>, and <i>Irvingia gabonesis</i>) through computational approaches. Molecular docking studies were carried out to show the binding affinities of the phytochemicals against two target receptors (DNA gyrase and Penicillin Binding Protein 3). In addition, drug likeness analysis, bioactivity and oral-bioavailability properties, absorption, distribution, metabolism, and excretion (ADME) profiling, as well as prediction of activity spectra for substances (PASS) using online tools like SwissADME, PASS online, AdmetSAR2, and Discovery Studio, were also performed. The results obtained identified isochlorogenic acid and apigenin-7-O-glucoside for DNA gyrase (1KZN) and apigenin-7-O-glucoside for Penicillin Binding Protein 3 (4BJP), which were further subjected to molecular dynamics simulation (MDS) and therefore recommended as the lead compounds.</p>","PeriodicalId":94038,"journal":{"name":"In silico pharmacology","volume":"12 2","pages":"65"},"PeriodicalIF":0.0000,"publicationDate":"2024-07-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11254879/pdf/","citationCount":"0","resultStr":"{\"title\":\"Antibacterial activities, PASS prediction and ADME analysis of phytochemicals from <i>Curcubita moschata</i>, <i>Curcubita maxima</i>, and <i>Irvingia gabonensis</i>: insights from in silico studies.\",\"authors\":\"Misbaudeen Abdul-Hammed, Ibrahim Olaide Adedotun, Modinat Wuraola Akinboade, Timilehin Adekunle Adegboyega, Oladele Muheez Salaudeen\",\"doi\":\"10.1007/s40203-024-00234-z\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Microbial infection management and treatment are crucial as a result of the prevalent antimicrobial resistance issue. Progressive studies are being carried out on how to develop drugs that can mitigate the resistance trends of these microorganisms. Secondary metabolites of plants can also be employed and accessed for this role, as the current study examines the antibacterial activities of phytochemicals from three (3) plants (<i>Cucubita moschata</i>, <i>Cucubita maxima</i>, and <i>Irvingia gabonesis</i>) through computational approaches. Molecular docking studies were carried out to show the binding affinities of the phytochemicals against two target receptors (DNA gyrase and Penicillin Binding Protein 3). In addition, drug likeness analysis, bioactivity and oral-bioavailability properties, absorption, distribution, metabolism, and excretion (ADME) profiling, as well as prediction of activity spectra for substances (PASS) using online tools like SwissADME, PASS online, AdmetSAR2, and Discovery Studio, were also performed. The results obtained identified isochlorogenic acid and apigenin-7-O-glucoside for DNA gyrase (1KZN) and apigenin-7-O-glucoside for Penicillin Binding Protein 3 (4BJP), which were further subjected to molecular dynamics simulation (MDS) and therefore recommended as the lead compounds.</p>\",\"PeriodicalId\":94038,\"journal\":{\"name\":\"In silico pharmacology\",\"volume\":\"12 2\",\"pages\":\"65\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-07-17\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11254879/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"In silico pharmacology\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1007/s40203-024-00234-z\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2024/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"In silico pharmacology","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1007/s40203-024-00234-z","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/1/1 0:00:00","PubModel":"eCollection","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
摘要
由于抗菌药耐药性问题的普遍存在,微生物感染的管理和治疗至关重要。目前正在逐步研究如何开发能够缓解这些微生物抗药性趋势的药物。本研究通过计算方法研究了三(3)种植物(Cucubita moschata、Cucubita maxima 和 Irvingia gabonesis)的植物化学物质的抗菌活性。分子对接研究显示了植物化学物质与两种靶受体(DNA 回旋酶和青霉素结合蛋白 3)的结合亲和力。此外,还使用 SwissADME、PASS online、AdmetSAR2 和 Discovery Studio 等在线工具进行了药物相似性分析、生物活性和口服生物利用度特性、吸收、分布、代谢和排泄(ADME)分析以及物质活性光谱(PASS)预测。结果发现异绿原酸和芹菜素-7-O-葡萄糖苷对 DNA 回旋酶(1KZN)有抑制作用,而芹菜素-7-O-葡萄糖苷对青霉素结合蛋白 3(4BJP)有抑制作用。
Antibacterial activities, PASS prediction and ADME analysis of phytochemicals from Curcubita moschata, Curcubita maxima, and Irvingia gabonensis: insights from in silico studies.
Microbial infection management and treatment are crucial as a result of the prevalent antimicrobial resistance issue. Progressive studies are being carried out on how to develop drugs that can mitigate the resistance trends of these microorganisms. Secondary metabolites of plants can also be employed and accessed for this role, as the current study examines the antibacterial activities of phytochemicals from three (3) plants (Cucubita moschata, Cucubita maxima, and Irvingia gabonesis) through computational approaches. Molecular docking studies were carried out to show the binding affinities of the phytochemicals against two target receptors (DNA gyrase and Penicillin Binding Protein 3). In addition, drug likeness analysis, bioactivity and oral-bioavailability properties, absorption, distribution, metabolism, and excretion (ADME) profiling, as well as prediction of activity spectra for substances (PASS) using online tools like SwissADME, PASS online, AdmetSAR2, and Discovery Studio, were also performed. The results obtained identified isochlorogenic acid and apigenin-7-O-glucoside for DNA gyrase (1KZN) and apigenin-7-O-glucoside for Penicillin Binding Protein 3 (4BJP), which were further subjected to molecular dynamics simulation (MDS) and therefore recommended as the lead compounds.