一种新型癌症相关成纤维细胞风险评分模型可预测肺腺癌患者的生存期和免疫疗法。

IF 2.3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Fanhua Kong, Zhongshan Lu, Yan Xiong, Lihua Zhou, Qifa Ye
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引用次数: 0

摘要

肺腺癌(LUAD)是全球癌症相关死亡的主要原因。癌症相关成纤维细胞(CAFs)是一种特殊类型的成纤维细胞,在肿瘤的发展和免疫逃逸过程中发挥着重要作用。加权基因共表达网络分析(WGCNA)用于构建共表达模块。结合单变量考克斯回归和最小绝对收缩算子分析(LASSO),建立了与CAFs相关的特征预后模型。在体外对肺癌细胞的迁移和增殖进行了评估。最后,通过 Western 印迹分析了蛋白质的表达水平。然后采用 LASSO Cox 回归算法筛选出枢纽基因。最后,共得到 2 个基因(COL5A2、COL6A2)。然后,我们根据 CAFs 风险评分将 LUAD 患者分为高风险组和低风险组。生存分析、CAFs评分相关性分析和肿瘤突变负荷分析表明,COL5A2和COL6A2是LUAD的高危基因。人类蛋白质图谱(HPA)、Western印迹和PCR结果显示,COL5A2和COL6A2在LUAD组织中上调。当 COL5A2 和 COL6A2 被敲除后,肺癌细胞的增殖、侵袭和迁移明显降低。最后,COL5A2可通过Wnt/β-Catenin和TGF-β信号通路影响LUAD的进展。我们的CAFs风险评分模型为预测LUAD患者的预后提供了一种新方法。此外,高风险基因COL5A2和COL6A2的鉴定以及药物敏感性分析可为LUAD的临床治疗提供有价值的候选线索。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

A novel cancer-associated fibroblasts risk score model predict survival and immunotherapy in lung adenocarcinoma.

A novel cancer-associated fibroblasts risk score model predict survival and immunotherapy in lung adenocarcinoma.

Lung adenocarcinoma (LUAD) is the leading cause of cancer-related death worldwide. Cancer-associated fibroblasts (CAFs) are a special type of fibroblasts, which play an important role in the development and immune escape of tumors. Weighted gene co-expression network analysis (WGCNA) was used to construct the co-expression module. In combination with univariate Cox regression and analysis of least absolute shrinkage operator (LASSO), characteristics associated with CAFs were developed for a prognostic model. The migration and proliferation of lung cancer cells were evaluated in vitro. Finally, the expression levels of proteins were analyzed by Western blot. LASSO Cox regression algorithm was then performed to select hub genes. Finally, a total of 2 Genes (COL5A2, COL6A2) were obtained. We then divided LUAD patients into high- and low-risk groups based on CAFs risk scores. Survival analysis, CAFs score correlation analysis and tumor mutation load analysis showed that COL5A2 and COL6A2 were high-risk genes for LUAD. Human Protein Atlas (HPA), western blot and PCR results showed that COL5A2 and COL6A2 were up-regulated in LUAD tissues. When COL5A2 and COL6A2 were knocked down, the proliferation, invasion and migration of lung cancer cells were significantly decreased. Finally, COL5A2 can affect LUAD progression through the Wnt/β-Catenin and TGF-β signaling pathways. Our CAFs risk score model offers a new approach for predicting the prognosis of LUAD patients. Furthermore, the identification of high-risk genes COL5A2 and COL6A2 and drug sensitivity analysis can provide valuable candidate clues for clinical treatment of LUAD.

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来源期刊
Molecular Genetics and Genomics
Molecular Genetics and Genomics 生物-生化与分子生物学
CiteScore
5.10
自引率
3.20%
发文量
134
审稿时长
1 months
期刊介绍: Molecular Genetics and Genomics (MGG) publishes peer-reviewed articles covering all areas of genetics and genomics. Any approach to the study of genes and genomes is considered, be it experimental, theoretical or synthetic. MGG publishes research on all organisms that is of broad interest to those working in the fields of genetics, genomics, biology, medicine and biotechnology. The journal investigates a broad range of topics, including these from recent issues: mechanisms for extending longevity in a variety of organisms; screening of yeast metal homeostasis genes involved in mitochondrial functions; molecular mapping of cultivar-specific avirulence genes in the rice blast fungus and more.
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